miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 61935 1.15 0.000618
Target:  5'- uGGCUUCACCUACGCGACCAAGCAGGCa -3'
miRNA:   3'- -CCGAAGUGGAUGCGCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 58891 0.82 0.120494
Target:  5'- uGGCUgcugcCGCgCUGCGCGAUCAGGCcGGCg -3'
miRNA:   3'- -CCGAa----GUG-GAUGCGCUGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 13781 0.82 0.120494
Target:  5'- gGGCUUCACUUcggugggcgccgGCGCGGCUucaucggcggGAGCGGGCg -3'
miRNA:   3'- -CCGAAGUGGA------------UGCGCUGG----------UUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 58638 0.79 0.167739
Target:  5'- cGGCcgUCACCgaucaGCGCG-CCGAGCAGGa -3'
miRNA:   3'- -CCGa-AGUGGa----UGCGCuGGUUCGUCCg -5'
23862 5' -54.3 NC_005262.1 + 41385 0.79 0.186867
Target:  5'- cGGCUg-ACCUACGCGACCGcuucaucgucGGCGccGGCa -3'
miRNA:   3'- -CCGAagUGGAUGCGCUGGU----------UCGU--CCG- -5'
23862 5' -54.3 NC_005262.1 + 45628 0.78 0.202451
Target:  5'- uGGgg-CGCUcGCGCGAUCAGGCGGGCa -3'
miRNA:   3'- -CCgaaGUGGaUGCGCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 50163 0.76 0.256078
Target:  5'- cGCgacCGCCUGCGCuaccuGACgAAGCAGGCc -3'
miRNA:   3'- cCGaa-GUGGAUGCG-----CUGgUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 12594 0.76 0.283431
Target:  5'- aGCaUCGCCcGCGCGGCUccAGCGGGCc -3'
miRNA:   3'- cCGaAGUGGaUGCGCUGGu-UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 8576 0.76 0.283431
Target:  5'- aGCgcgGCCUGCGCGACgAAGCGacGGCg -3'
miRNA:   3'- cCGaagUGGAUGCGCUGgUUCGU--CCG- -5'
23862 5' -54.3 NC_005262.1 + 44102 0.75 0.320805
Target:  5'- cGGCUgaUCGCCUGgGCGAaaGAGCGcaucGGCg -3'
miRNA:   3'- -CCGA--AGUGGAUgCGCUggUUCGU----CCG- -5'
23862 5' -54.3 NC_005262.1 + 2647 0.75 0.320805
Target:  5'- cGGCccaUGCCUGCGCGgcGCCGGGC-GGCg -3'
miRNA:   3'- -CCGaa-GUGGAUGCGC--UGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 45386 0.74 0.344944
Target:  5'- gGGUagCAUCUGgGCGGCgCAgcAGCAGGCa -3'
miRNA:   3'- -CCGaaGUGGAUgCGCUG-GU--UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 54952 0.74 0.350761
Target:  5'- cGCUUCaACCUGCGCGaaaaccagaagcgcGCCAucuGGCGcGGCa -3'
miRNA:   3'- cCGAAG-UGGAUGCGC--------------UGGU---UCGU-CCG- -5'
23862 5' -54.3 NC_005262.1 + 13466 0.74 0.360894
Target:  5'- cGCUUCGuCCUGCGCGGCgGgcgcugcGGCcGGCu -3'
miRNA:   3'- cCGAAGU-GGAUGCGCUGgU-------UCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 28285 0.74 0.382652
Target:  5'- cGGCgcugUCGCCUAUGCG-CgCAAGCgcgugcgcaugaucgAGGCa -3'
miRNA:   3'- -CCGa---AGUGGAUGCGCuG-GUUCG---------------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 40509 0.73 0.397937
Target:  5'- cGGCaccaUCgACCUGCGCGACaaguucaucgucgcGGCGGGCg -3'
miRNA:   3'- -CCGa---AG-UGGAUGCGCUGgu------------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 50302 0.73 0.400675
Target:  5'- cGcCUUCGCCUucgccagcgaguagcGCGCGACgCGcGCGGGCu -3'
miRNA:   3'- cC-GAAGUGGA---------------UGCGCUG-GUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4544 0.73 0.400675
Target:  5'- gGGCUUCAUCgUGCGCGcgcggcgcaucucgcGCCAgcGGCGGcGCu -3'
miRNA:   3'- -CCGAAGUGG-AUGCGC---------------UGGU--UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 38340 0.73 0.406187
Target:  5'- cGGCaUCGCCU-CGCGcagcGCCucGGGCAGGUu -3'
miRNA:   3'- -CCGaAGUGGAuGCGC----UGG--UUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 32879 0.73 0.406187
Target:  5'- aGCUguUCGCCgcgucgaACGuCGGCCAAGCcGGCg -3'
miRNA:   3'- cCGA--AGUGGa------UGC-GCUGGUUCGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.