miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 21307 0.73 0.413609
Target:  5'- cGGCUgcucaccaacccCACCUACGCGcacguCCAGG-AGGCg -3'
miRNA:   3'- -CCGAa-----------GUGGAUGCGCu----GGUUCgUCCG- -5'
23862 5' -54.3 NC_005262.1 + 47128 0.73 0.41923
Target:  5'- cGGCUUCAacgucaagcucaaggUCgACGCGACC-GGCgAGGCg -3'
miRNA:   3'- -CCGAAGU---------------GGaUGCGCUGGuUCG-UCCG- -5'
23862 5' -54.3 NC_005262.1 + 55510 0.73 0.424897
Target:  5'- uGGC--CGCCU-CGCGAgCGAcGCGGGCa -3'
miRNA:   3'- -CCGaaGUGGAuGCGCUgGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 32311 0.73 0.424897
Target:  5'- aGGCagCGCgUGCGCuguucaugGGCCGucaGGCAGGCg -3'
miRNA:   3'- -CCGaaGUGgAUGCG--------CUGGU---UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 61798 0.73 0.424897
Target:  5'- -uUUUCGCCUGCGCGGCgCAuGCcucGGCg -3'
miRNA:   3'- ccGAAGUGGAUGCGCUG-GUuCGu--CCG- -5'
23862 5' -54.3 NC_005262.1 + 52952 0.72 0.444113
Target:  5'- gGGCUUCGCCg--GCGGCaaggugcuCGAGcCGGGCa -3'
miRNA:   3'- -CCGAAGUGGaugCGCUG--------GUUC-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 49285 0.72 0.444113
Target:  5'- uGCUguugccgaUCGCCUuguaGCGCgGACCGucagcAGCAGGCu -3'
miRNA:   3'- cCGA--------AGUGGA----UGCG-CUGGU-----UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 38058 0.72 0.463807
Target:  5'- cGGCUUgccgGCCUGCGCGAUCGccucGGCcuGCa -3'
miRNA:   3'- -CCGAAg---UGGAUGCGCUGGU----UCGucCG- -5'
23862 5' -54.3 NC_005262.1 + 13513 0.72 0.463807
Target:  5'- cGGCcgUCACggGCuCGGCCGGcGCGGGCg -3'
miRNA:   3'- -CCGa-AGUGgaUGcGCUGGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60046 0.72 0.472818
Target:  5'- gGGCUcgaUCGCCUgagccGCGCGGaacccauCCAGgcGCAGGCc -3'
miRNA:   3'- -CCGA---AGUGGA-----UGCGCU-------GGUU--CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 17374 0.72 0.473824
Target:  5'- cGGCgggCcCCUGCG-GACCuuGCGGGCc -3'
miRNA:   3'- -CCGaa-GuGGAUGCgCUGGuuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4821 0.72 0.473824
Target:  5'- uGGUUUCGCCgGCGCGAC---GCAGuGCc -3'
miRNA:   3'- -CCGAAGUGGaUGCGCUGguuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 51525 0.72 0.473824
Target:  5'- cGGC-UCGCCggcCGCGAUCGA-CAGGUg -3'
miRNA:   3'- -CCGaAGUGGau-GCGCUGGUUcGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 43977 0.72 0.483949
Target:  5'- aGGC-UCugC-GCGUGAUCGcGCGGGCg -3'
miRNA:   3'- -CCGaAGugGaUGCGCUGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 13697 0.72 0.483949
Target:  5'- cGGCUUCugUUcGCGCGGCgCGGGUucggucGGCg -3'
miRNA:   3'- -CCGAAGugGA-UGCGCUG-GUUCGu-----CCG- -5'
23862 5' -54.3 NC_005262.1 + 16556 0.71 0.5045
Target:  5'- cGCUcccguUCACggcCGCGgauGCCGAGCAGGCg -3'
miRNA:   3'- cCGA-----AGUGgauGCGC---UGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 5196 0.71 0.514917
Target:  5'- gGGCgcgGCCgGCGCGACCGAG--GGCg -3'
miRNA:   3'- -CCGaagUGGaUGCGCUGGUUCguCCG- -5'
23862 5' -54.3 NC_005262.1 + 13979 0.71 0.525419
Target:  5'- cGCUcCAUC-GCGCGGCCGAuCGGGCc -3'
miRNA:   3'- cCGAaGUGGaUGCGCUGGUUcGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 46251 0.71 0.540256
Target:  5'- cGGCUgcCGCCUcgcGCGCGACCGcguGCccgugcaucgucgucAGGCu -3'
miRNA:   3'- -CCGAa-GUGGA---UGCGCUGGUu--CG---------------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 44147 0.7 0.546658
Target:  5'- cGGCcggaCGCgcGCGCGAUCGGGCAGGa -3'
miRNA:   3'- -CCGaa--GUGgaUGCGCUGGUUCGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.