miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 61326 0.66 0.814885
Target:  5'- cGCggCACC-ACGCGcaugcucaacguccACCGuaagaccggcgaguGGCAGGCa -3'
miRNA:   3'- cCGaaGUGGaUGCGC--------------UGGU--------------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 4844 0.66 0.801672
Target:  5'- cGGCUgguucgaCugCUGCGCGccgACCGAGaAGcGCg -3'
miRNA:   3'- -CCGAa------GugGAUGCGC---UGGUUCgUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 18834 0.66 0.801672
Target:  5'- cGGCccUCGCCUcgGCGGCCAucuGCuccugacgcucgGGGCu -3'
miRNA:   3'- -CCGa-AGUGGAugCGCUGGUu--CG------------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 10231 0.66 0.820435
Target:  5'- cGGUcagCGCgUGCGCG-CCGAGCAccaucucggGGUa -3'
miRNA:   3'- -CCGaa-GUGgAUGCGCuGGUUCGU---------CCG- -5'
23862 5' -54.3 NC_005262.1 + 52002 0.66 0.824096
Target:  5'- uGCagcCACCUugugaggguagaggaGCGCGcCCAGGuCGGGCc -3'
miRNA:   3'- cCGaa-GUGGA---------------UGCGCuGGUUC-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 19957 0.66 0.820435
Target:  5'- cGGCcacCGCCgcGCGCGGCCGGcccGC-GGCc -3'
miRNA:   3'- -CCGaa-GUGGa-UGCGCUGGUU---CGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 42421 0.66 0.801672
Target:  5'- aGGCggCGCCaGC-CGGCCGcaacaucacgaAGCAGcGCa -3'
miRNA:   3'- -CCGaaGUGGaUGcGCUGGU-----------UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 21227 0.66 0.810208
Target:  5'- aGUUUCuugucgACCUgaacggcacgaagGCgGCGAuCCGAGCGGGCu -3'
miRNA:   3'- cCGAAG------UGGA-------------UG-CGCU-GGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 62963 0.66 0.811147
Target:  5'- cGCUUCcgGCCgacACGCGGCUcuauCAGGCc -3'
miRNA:   3'- cCGAAG--UGGa--UGCGCUGGuuc-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 3822 0.66 0.820435
Target:  5'- cGGgUgCAUgcGCGCcuGAUCGAGCGGGCg -3'
miRNA:   3'- -CCgAaGUGgaUGCG--CUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60633 0.66 0.811147
Target:  5'- uGGCg--ACCUGCGCaugcGCCAGaaAGGCa -3'
miRNA:   3'- -CCGaagUGGAUGCGc---UGGUUcgUCCG- -5'
23862 5' -54.3 NC_005262.1 + 16050 0.66 0.792022
Target:  5'- cGGgUUCGCC---GCGGCCG-GCGGcGCa -3'
miRNA:   3'- -CCgAAGUGGaugCGCUGGUuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 33277 0.66 0.792994
Target:  5'- uGCUUCGCCcaggucgGCGaCGACCAucucgugcgccugacGCAGGa -3'
miRNA:   3'- cCGAAGUGGa------UGC-GCUGGUu--------------CGUCCg -5'
23862 5' -54.3 NC_005262.1 + 34344 0.66 0.801672
Target:  5'- cGGCg--ACCUGCGCcucuGCCGcagccuuGCGGGCc -3'
miRNA:   3'- -CCGaagUGGAUGCGc---UGGUu------CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 38904 0.66 0.819515
Target:  5'- cGGCUggccgagcUCGCCUucacGCGcCGgcggaugcacaucGCCGAGCAcuGGCg -3'
miRNA:   3'- -CCGA--------AGUGGA----UGC-GC-------------UGGUUCGU--CCG- -5'
23862 5' -54.3 NC_005262.1 + 41636 0.66 0.811147
Target:  5'- -cCUUCGCCUccaGCuCGGCgAuGCGGGCa -3'
miRNA:   3'- ccGAAGUGGA---UGcGCUGgUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 29073 0.66 0.811147
Target:  5'- cGGCUcgACCUGCGUGaACCAcuucGGCugcccGGUc -3'
miRNA:   3'- -CCGAagUGGAUGCGC-UGGU----UCGu----CCG- -5'
23862 5' -54.3 NC_005262.1 + 36628 0.66 0.792022
Target:  5'- cGGCaccaCACC-AUGCGGCCGguguGCcGGCa -3'
miRNA:   3'- -CCGaa--GUGGaUGCGCUGGUu---CGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 38798 0.66 0.789094
Target:  5'- aGGUUUCcagACC-GCGCucgaaugccgccucGACCAAGCcGGCc -3'
miRNA:   3'- -CCGAAG---UGGaUGCG--------------CUGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 51393 0.66 0.801672
Target:  5'- aGGCcgCGCCUGaccgugugcacCGCGugCucGGCGGcGCg -3'
miRNA:   3'- -CCGaaGUGGAU-----------GCGCugGu-UCGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.