miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 10496 0.66 0.792022
Target:  5'- aGCagCGCCaGCaugGCGGCCAgcAGCAGcGCg -3'
miRNA:   3'- cCGaaGUGGaUG---CGCUGGU--UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 51180 0.66 0.791047
Target:  5'- aGGCa--GCCgacgACGCGgcggcccgcuggaGCCGcGCGGGCg -3'
miRNA:   3'- -CCGaagUGGa---UGCGC-------------UGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 32978 0.66 0.782205
Target:  5'- cGGCgugaagaUCACgguCGCGGCgCAGacGCAGGCa -3'
miRNA:   3'- -CCGa------AGUGgauGCGCUG-GUU--CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 21227 0.66 0.810208
Target:  5'- aGUUUCuugucgACCUgaacggcacgaagGCgGCGAuCCGAGCGGGCu -3'
miRNA:   3'- cCGAAG------UGGA-------------UG-CGCU-GGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60493 0.66 0.792022
Target:  5'- gGGCgagaCGCCgggccGCGCGGC---GCAGGCc -3'
miRNA:   3'- -CCGaa--GUGGa----UGCGCUGguuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 44293 0.66 0.801672
Target:  5'- aGCgUUCGCCUACcCGuucauCCAGuGCGGGUu -3'
miRNA:   3'- cCG-AAGUGGAUGcGCu----GGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 17913 0.66 0.801672
Target:  5'- cGGCgagcCGCCgaucgGCGcCGACgccaacggCGAGCAGGUc -3'
miRNA:   3'- -CCGaa--GUGGa----UGC-GCUG--------GUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 25891 0.66 0.801672
Target:  5'- cGGCaUCACgauCGauGCCGAGCAGcGCg -3'
miRNA:   3'- -CCGaAGUGgauGCgcUGGUUCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 1146 0.66 0.782205
Target:  5'- gGGCUUCG---AUGCuGCCGcGCGGGCu -3'
miRNA:   3'- -CCGAAGUggaUGCGcUGGUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 3729 0.66 0.792022
Target:  5'- gGGCcugCGCCUggauggguuccGCGCGGCU---CAGGCg -3'
miRNA:   3'- -CCGaa-GUGGA-----------UGCGCUGGuucGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 5078 0.66 0.801672
Target:  5'- cGGCggCGCgUGCGacCGGCUcGGCGGuGCg -3'
miRNA:   3'- -CCGaaGUGgAUGC--GCUGGuUCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 51393 0.66 0.801672
Target:  5'- aGGCcgCGCCUGaccgugugcacCGCGugCucGGCGGcGCg -3'
miRNA:   3'- -CCGaaGUGGAU-----------GCGCugGu-UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 36137 0.66 0.811147
Target:  5'- aGGCgagCACCgccaGCGCGAUCGaccagcucgAGCAGa- -3'
miRNA:   3'- -CCGaa-GUGGa---UGCGCUGGU---------UCGUCcg -5'
23862 5' -54.3 NC_005262.1 + 50017 0.66 0.782205
Target:  5'- cGGCgccCACCgaaGUGAagcCCGAGCcGGCg -3'
miRNA:   3'- -CCGaa-GUGGaugCGCU---GGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 26855 0.66 0.782205
Target:  5'- aGCUUCugCUggccucucccgcACGgucaCGAUCGAGUGGGCc -3'
miRNA:   3'- cCGAAGugGA------------UGC----GCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 17066 0.66 0.810208
Target:  5'- cGCgcacggCGCCgauagGCGCGcCCGucgacgcGGCGGGCc -3'
miRNA:   3'- cCGaa----GUGGa----UGCGCuGGU-------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 43670 0.66 0.811147
Target:  5'- uGGCg--ACCUgaACGCaaGCCAAGcCGGGCc -3'
miRNA:   3'- -CCGaagUGGA--UGCGc-UGGUUC-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 11656 0.66 0.782205
Target:  5'- cGGCgUCGCgCUgcACGCuGGCCG-GCAGaGCu -3'
miRNA:   3'- -CCGaAGUG-GA--UGCG-CUGGUuCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 22667 0.66 0.811147
Target:  5'- uGGCUUCAgg-GCGCGgACCAGugcGCAGacGCg -3'
miRNA:   3'- -CCGAAGUggaUGCGC-UGGUU---CGUC--CG- -5'
23862 5' -54.3 NC_005262.1 + 42421 0.66 0.801672
Target:  5'- aGGCggCGCCaGC-CGGCCGcaacaucacgaAGCAGcGCa -3'
miRNA:   3'- -CCGaaGUGGaUGcGCUGGU-----------UCGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.