miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 62963 0.66 0.811147
Target:  5'- cGCUUCcgGCCgacACGCGGCUcuauCAGGCc -3'
miRNA:   3'- cCGAAG--UGGa--UGCGCUGGuuc-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 61935 1.15 0.000618
Target:  5'- uGGCUUCACCUACGCGACCAAGCAGGCa -3'
miRNA:   3'- -CCGAAGUGGAUGCGCUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 61798 0.73 0.424897
Target:  5'- -uUUUCGCCUGCGCGGCgCAuGCcucGGCg -3'
miRNA:   3'- ccGAAGUGGAUGCGCUG-GUuCGu--CCG- -5'
23862 5' -54.3 NC_005262.1 + 61326 0.66 0.814885
Target:  5'- cGCggCACC-ACGCGcaugcucaacguccACCGuaagaccggcgaguGGCAGGCa -3'
miRNA:   3'- cCGaaGUGGaUGCGC--------------UGGU--------------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60832 0.7 0.578997
Target:  5'- uGCgccgGCCUACGCGAUC-GGCGuGGCg -3'
miRNA:   3'- cCGaag-UGGAUGCGCUGGuUCGU-CCG- -5'
23862 5' -54.3 NC_005262.1 + 60633 0.66 0.811147
Target:  5'- uGGCg--ACCUGCGCaugcGCCAGaaAGGCa -3'
miRNA:   3'- -CCGaagUGGAUGCGc---UGGUUcgUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60493 0.66 0.792022
Target:  5'- gGGCgagaCGCCgggccGCGCGGC---GCAGGCc -3'
miRNA:   3'- -CCGaa--GUGGa----UGCGCUGguuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 60046 0.72 0.472818
Target:  5'- gGGCUcgaUCGCCUgagccGCGCGGaacccauCCAGgcGCAGGCc -3'
miRNA:   3'- -CCGA---AGUGGA-----UGCGCU-------GGUU--CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 58891 0.82 0.120494
Target:  5'- uGGCUgcugcCGCgCUGCGCGAUCAGGCcGGCg -3'
miRNA:   3'- -CCGAa----GUG-GAUGCGCUGGUUCGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 58746 0.68 0.688249
Target:  5'- cGGC---GCCUACaCGAUCGagcaguacgAGCAGGCa -3'
miRNA:   3'- -CCGaagUGGAUGcGCUGGU---------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 58638 0.79 0.167739
Target:  5'- cGGCcgUCACCgaucaGCGCG-CCGAGCAGGa -3'
miRNA:   3'- -CCGa-AGUGGa----UGCGCuGGUUCGUCCg -5'
23862 5' -54.3 NC_005262.1 + 57477 0.66 0.811147
Target:  5'- cGGCgggCGCCgacgagAgGCGGCCGgcgAGCgcaagaAGGCg -3'
miRNA:   3'- -CCGaa-GUGGa-----UgCGCUGGU---UCG------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 57223 0.68 0.699052
Target:  5'- cGGCggCAUCgcgACGCGcgccGCCAAuCAGGUg -3'
miRNA:   3'- -CCGaaGUGGa--UGCGC----UGGUUcGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 56817 0.67 0.727865
Target:  5'- cGGCUggagCGCCUgagcuACGCGcACCAcgacgaccagaacaAGCuccGGCg -3'
miRNA:   3'- -CCGAa---GUGGA-----UGCGC-UGGU--------------UCGu--CCG- -5'
23862 5' -54.3 NC_005262.1 + 56446 0.66 0.782205
Target:  5'- uGGCgaCGCCUaaGCGCGGCUAu-CGGGa -3'
miRNA:   3'- -CCGaaGUGGA--UGCGCUGGUucGUCCg -5'
23862 5' -54.3 NC_005262.1 + 55510 0.73 0.424897
Target:  5'- uGGC--CGCCU-CGCGAgCGAcGCGGGCa -3'
miRNA:   3'- -CCGaaGUGGAuGCGCUgGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 55005 0.68 0.699052
Target:  5'- aGGCgacaugUACCUcgcgcACGCGGUCGGcGCGGGCa -3'
miRNA:   3'- -CCGaa----GUGGA-----UGCGCUGGUU-CGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 54952 0.74 0.350761
Target:  5'- cGCUUCaACCUGCGCGaaaaccagaagcgcGCCAucuGGCGcGGCa -3'
miRNA:   3'- cCGAAG-UGGAUGCGC--------------UGGU---UCGU-CCG- -5'
23862 5' -54.3 NC_005262.1 + 54918 0.69 0.611725
Target:  5'- cGGCUcgCACCUgACGCuGCCGGGCGuGUc -3'
miRNA:   3'- -CCGAa-GUGGA-UGCGcUGGUUCGUcCG- -5'
23862 5' -54.3 NC_005262.1 + 54612 0.66 0.782205
Target:  5'- gGGCUg-AUCUGCGcCGACCGccauGCgugaAGGCg -3'
miRNA:   3'- -CCGAagUGGAUGC-GCUGGUu---CG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.