Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23863 | 5' | -57.8 | NC_005262.1 | + | 6488 | 0.67 | 0.474709 |
Target: 5'- uGCCGauCUGCuCGAUGCGGCGcucguucUGCUGCAc -3' miRNA: 3'- -UGGU--GACG-GUUGUGCCGU-------ACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 3626 | 0.67 | 0.495063 |
Target: 5'- cCCACUgGCCGAgcgccuuCACGGCG-GCCGgGUa -3' miRNA: 3'- uGGUGA-CGGUU-------GUGCCGUaCGGCgUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 57729 | 0.67 | 0.474709 |
Target: 5'- gGCCGCgGCCuGACgcaaccccgugguGCGGUaucGUGCCGCAc -3' miRNA: 3'- -UGGUGaCGG-UUG-------------UGCCG---UACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 43331 | 0.67 | 0.485853 |
Target: 5'- cGCCGCUcugcggaacaGCCcACGCGGCgacgGUGCCGgAa -3' miRNA: 3'- -UGGUGA----------CGGuUGUGCCG----UACGGCgUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 34163 | 0.67 | 0.485853 |
Target: 5'- cUCGCUGCCGAUGCcGguUGCgGCGUg -3' miRNA: 3'- uGGUGACGGUUGUGcCguACGgCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 27382 | 0.67 | 0.491984 |
Target: 5'- uGCCAUccagcgaUGCCGGCACagguugaaugucggGGUucaGUGCCGCAUu -3' miRNA: 3'- -UGGUG-------ACGGUUGUG--------------CCG---UACGGCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 38951 | 0.67 | 0.516852 |
Target: 5'- -gCACUGgcgcagggugaUCGGCACGGCGccgGCCGCGa -3' miRNA: 3'- ugGUGAC-----------GGUUGUGCCGUa--CGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 63274 | 0.67 | 0.465686 |
Target: 5'- aGCCGCcGCCuGCuugACGGCcgGCUGCu- -3' miRNA: 3'- -UGGUGaCGGuUG---UGCCGuaCGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 46580 | 0.67 | 0.475716 |
Target: 5'- gACCACgacGCCAGCGCcGUccucGCCGCAg -3' miRNA: 3'- -UGGUGa--CGGUUGUGcCGua--CGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 10778 | 0.67 | 0.484835 |
Target: 5'- cCCGC-GCCGggcGCGCGGUAcugcugcgcgagcUGCCGCGa -3' miRNA: 3'- uGGUGaCGGU---UGUGCCGU-------------ACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 43055 | 0.67 | 0.485853 |
Target: 5'- gACC-CgGCCGGCACcGCGcGCCGCGg -3' miRNA: 3'- -UGGuGaCGGUUGUGcCGUaCGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 16482 | 0.67 | 0.496091 |
Target: 5'- cCCGCUGCCGgacgaGCugGGCGaGgCGCu- -3' miRNA: 3'- uGGUGACGGU-----UGugCCGUaCgGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 209 | 0.67 | 0.465686 |
Target: 5'- uCCGCaGCgCGcGCACGaGCAUGCCGUAc -3' miRNA: 3'- uGGUGaCG-GU-UGUGC-CGUACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 35750 | 0.67 | 0.506426 |
Target: 5'- cACUACgGCCAAgGCGGCAUuuucguucacccGCgCGCGa -3' miRNA: 3'- -UGGUGaCGGUUgUGCCGUA------------CG-GCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 22234 | 0.66 | 0.527362 |
Target: 5'- gGCCGCgccGCCcACGcCGGCcgGCCuGCGc -3' miRNA: 3'- -UGGUGa--CGGuUGU-GCCGuaCGG-CGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 27155 | 0.66 | 0.527362 |
Target: 5'- uACUGgUGCCGGCACa-CcgGCCGCAUg -3' miRNA: 3'- -UGGUgACGGUUGUGccGuaCGGCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 59121 | 0.66 | 0.537951 |
Target: 5'- uACCGCgccgagGCgAAC-CGGCcggGCCGCGUc -3' miRNA: 3'- -UGGUGa-----CGgUUGuGCCGua-CGGCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 1137 | 0.66 | 0.537951 |
Target: 5'- gGCCGCUGCgGGCuuCGauGC-UGCCGCGc -3' miRNA: 3'- -UGGUGACGgUUGu-GC--CGuACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 40387 | 0.66 | 0.537951 |
Target: 5'- gGCCuguCUGCCGcguucGCGCGGauucaGCCGCGc -3' miRNA: 3'- -UGGu--GACGGU-----UGUGCCgua--CGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 63624 | 0.66 | 0.536889 |
Target: 5'- cGCUGCUGUaCGACAUGGCAaaaagcaUGUCGCu- -3' miRNA: 3'- -UGGUGACG-GUUGUGCCGU-------ACGGCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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