Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 3' | -54.7 | NC_005262.1 | + | 61616 | 1.08 | 0.001684 |
Target: 5'- gCCUACGAGACGCAGCCGUCCGACAAUa -3' miRNA: 3'- -GGAUGCUCUGCGUCGGCAGGCUGUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 15412 | 0.74 | 0.358119 |
Target: 5'- --aGCGAGGCGCGGUCGUaacCCGACu-- -3' miRNA: 3'- ggaUGCUCUGCGUCGGCA---GGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 19614 | 0.72 | 0.449156 |
Target: 5'- -gUGCGAGugGCGGUCGgcguccagcCCGGCAAa -3' miRNA: 3'- ggAUGCUCugCGUCGGCa--------GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 17704 | 0.72 | 0.458949 |
Target: 5'- -gUACGcGGCGCGGCCGUCCuccCAAUa -3' miRNA: 3'- ggAUGCuCUGCGUCGGCAGGcu-GUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 49337 | 0.72 | 0.468855 |
Target: 5'- -aUACGGGACaucgguGUAGCCGUCCGGgAAc -3' miRNA: 3'- ggAUGCUCUG------CGUCGGCAGGCUgUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 23427 | 0.71 | 0.498178 |
Target: 5'- --cAUGAGcCGCgucaucgAGCCGUCCGACGAc -3' miRNA: 3'- ggaUGCUCuGCG-------UCGGCAGGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 55897 | 0.71 | 0.519914 |
Target: 5'- uCCUgACGAGccaacagcucGCGCAGuacgucgaCCGUCCGGCGAUc -3' miRNA: 3'- -GGA-UGCUC----------UGCGUC--------GGCAGGCUGUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 32847 | 0.7 | 0.539894 |
Target: 5'- gCCUGCGGGAaguaGCGcGCCGUCaugccggaaucggCGACGAa -3' miRNA: 3'- -GGAUGCUCUg---CGU-CGGCAG-------------GCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 27822 | 0.7 | 0.55158 |
Target: 5'- --aGCGAGaaGCGCGGCCGgUCUGACu-- -3' miRNA: 3'- ggaUGCUC--UGCGUCGGC-AGGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 57134 | 0.7 | 0.569785 |
Target: 5'- uCCgGCGAGuacauCGCGGCCGUgucggucgacauccCCGGCGAc -3' miRNA: 3'- -GGaUGCUCu----GCGUCGGCA--------------GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 17837 | 0.69 | 0.594638 |
Target: 5'- aCUgGCGAGAuggaaaCGCGGCCGU-CGACAGc -3' miRNA: 3'- gGA-UGCUCU------GCGUCGGCAgGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 35617 | 0.69 | 0.627285 |
Target: 5'- --gGCGu--UGCAGUCGUCCGGCAAc -3' miRNA: 3'- ggaUGCucuGCGUCGGCAGGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 28070 | 0.68 | 0.670825 |
Target: 5'- gCCaUGCGAGgaucaGCGUGGCCGUcccgCCGACGc- -3' miRNA: 3'- -GG-AUGCUC-----UGCGUCGGCA----GGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 49239 | 0.68 | 0.670825 |
Target: 5'- gCCgcgGCGAGACGCcuGCCGaUCCaGCGc- -3' miRNA: 3'- -GGa--UGCUCUGCGu-CGGC-AGGcUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 17405 | 0.68 | 0.670825 |
Target: 5'- cCCgACGAGGCGC-GCCuGUUCGGCc-- -3' miRNA: 3'- -GGaUGCUCUGCGuCGG-CAGGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 49946 | 0.68 | 0.670825 |
Target: 5'- cCCggaugGCGuGACGUucgAGCCGaucgCCGACGAg -3' miRNA: 3'- -GGa----UGCuCUGCG---UCGGCa---GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 34514 | 0.68 | 0.670825 |
Target: 5'- uUCUGCGAgacGACGCGGCUGUggcguuUUGACGAc -3' miRNA: 3'- -GGAUGCU---CUGCGUCGGCA------GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 57413 | 0.68 | 0.680566 |
Target: 5'- aCCgcCGAGAagGCGGCCGacaacgcUCCGGCAc- -3' miRNA: 3'- -GGauGCUCUg-CGUCGGC-------AGGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 62305 | 0.67 | 0.724361 |
Target: 5'- cCCUcCGcAGAUGCAGCgGcagcgCCGGCAGa -3' miRNA: 3'- -GGAuGC-UCUGCGUCGgCa----GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 54353 | 0.67 | 0.731708 |
Target: 5'- aUCUACGAgGACccggcgaagggcugGCAGaCGUCCGACGc- -3' miRNA: 3'- -GGAUGCU-CUG--------------CGUCgGCAGGCUGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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