miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 3' -54.7 NC_005262.1 + 992 0.67 0.744188
Target:  5'- aCCUGCGGGGCGgGGCgGUguagagcuugucgCCGAUc-- -3'
miRNA:   3'- -GGAUGCUCUGCgUCGgCA-------------GGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 5315 0.67 0.734842
Target:  5'- gCUACcAGAUGgAucguGCCGUCCGACGu- -3'
miRNA:   3'- gGAUGcUCUGCgU----CGGCAGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 7710 0.66 0.804752
Target:  5'- aUCgcCGAGAaaCGGCCGUCCG-CGAUc -3'
miRNA:   3'- -GGauGCUCUgcGUCGGCAGGCuGUUA- -5'
23864 3' -54.7 NC_005262.1 + 11893 0.66 0.785505
Target:  5'- gCCgGCGAagcGGuCGguGCCGUUCGGCGGc -3'
miRNA:   3'- -GGaUGCU---CU-GCguCGGCAGGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 13755 0.66 0.765633
Target:  5'- gUCU-CGGGA-GCAGCCGgcgCCGGCu-- -3'
miRNA:   3'- -GGAuGCUCUgCGUCGGCa--GGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 14186 0.66 0.785505
Target:  5'- gCCUgguuaGCGAcGuCGCGGCCGagCGACAc- -3'
miRNA:   3'- -GGA-----UGCU-CuGCGUCGGCagGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 15103 0.66 0.804752
Target:  5'- uUCUGCG--GCGCGG-CGUCCGGCu-- -3'
miRNA:   3'- -GGAUGCucUGCGUCgGCAGGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 15412 0.74 0.358119
Target:  5'- --aGCGAGGCGCGGUCGUaacCCGACu-- -3'
miRNA:   3'- ggaUGCUCUGCGUCGGCA---GGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 17329 0.66 0.804752
Target:  5'- gCUGCGucguggccGGCGCGGCauucggGUCCGGCGc- -3'
miRNA:   3'- gGAUGCu-------CUGCGUCGg-----CAGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 17405 0.68 0.670825
Target:  5'- cCCgACGAGGCGC-GCCuGUUCGGCc-- -3'
miRNA:   3'- -GGaUGCUCUGCGuCGG-CAGGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 17704 0.72 0.458949
Target:  5'- -gUACGcGGCGCGGCCGUCCuccCAAUa -3'
miRNA:   3'- ggAUGCuCUGCGUCGGCAGGcu-GUUA- -5'
23864 3' -54.7 NC_005262.1 + 17837 0.69 0.594638
Target:  5'- aCUgGCGAGAuggaaaCGCGGCCGU-CGACAGc -3'
miRNA:   3'- gGA-UGCUCU------GCGUCGGCAgGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 17997 0.66 0.785505
Target:  5'- uUCUuCGAcGugGCuGCCGggcCCGACGAg -3'
miRNA:   3'- -GGAuGCU-CugCGuCGGCa--GGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 19614 0.72 0.449156
Target:  5'- -gUGCGAGugGCGGUCGgcguccagcCCGGCAAa -3'
miRNA:   3'- ggAUGCUCugCGUCGGCa--------GGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 21576 0.66 0.795212
Target:  5'- aCCgcgaGCGGGuACGUcguGCCG-CCGACGAUc -3'
miRNA:   3'- -GGa---UGCUC-UGCGu--CGGCaGGCUGUUA- -5'
23864 3' -54.7 NC_005262.1 + 23427 0.71 0.498178
Target:  5'- --cAUGAGcCGCgucaucgAGCCGUCCGACGAc -3'
miRNA:   3'- ggaUGCUCuGCG-------UCGGCAGGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 27822 0.7 0.55158
Target:  5'- --aGCGAGaaGCGCGGCCGgUCUGACu-- -3'
miRNA:   3'- ggaUGCUC--UGCGUCGGC-AGGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 28070 0.68 0.670825
Target:  5'- gCCaUGCGAGgaucaGCGUGGCCGUcccgCCGACGc- -3'
miRNA:   3'- -GG-AUGCUC-----UGCGUCGGCA----GGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 32847 0.7 0.539894
Target:  5'- gCCUGCGGGAaguaGCGcGCCGUCaugccggaaucggCGACGAa -3'
miRNA:   3'- -GGAUGCUCUg---CGU-CGGCAG-------------GCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 34008 0.66 0.804752
Target:  5'- gUUGCuGGGGugcCGC-GCCGUCCGGCAc- -3'
miRNA:   3'- gGAUG-CUCU---GCGuCGGCAGGCUGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.