miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 12003 0.67 0.744279
Target:  5'- ---gGCGUgGACaCGuuUGCACGGCGCAa -3'
miRNA:   3'- acuaCGCGaCUG-GCu-ACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 24069 0.67 0.733662
Target:  5'- uUGAUGCGCUGcGCC--UGCu--GCGCGa -3'
miRNA:   3'- -ACUACGCGAC-UGGcuACGuguUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 10427 0.67 0.733662
Target:  5'- aGAUcGuCGCUGACCGcAUGCA-GAUGCu -3'
miRNA:   3'- aCUA-C-GCGACUGGC-UACGUgUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 47742 0.67 0.732594
Target:  5'- cUGGUGCGCcgccGGCCGcgGCgaacccgGCAucGCGCGg -3'
miRNA:   3'- -ACUACGCGa---CUGGCuaCG-------UGU--UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 38820 0.67 0.732594
Target:  5'- gGAUaCGCUGACCGucucgcGUGCucaggaaggcacgGCAGCGCu -3'
miRNA:   3'- aCUAcGCGACUGGC------UACG-------------UGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 34084 0.68 0.72294
Target:  5'- gGAUGCuGCuUGGcCCGGUGCggGCGguuGCGCAg -3'
miRNA:   3'- aCUACG-CG-ACU-GGCUACG--UGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 32034 0.68 0.72294
Target:  5'- cGAUGCgGCggauguugugGACCG-UGCGCuuGCGCGa -3'
miRNA:   3'- aCUACG-CGa---------CUGGCuACGUGu-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 49196 0.68 0.72294
Target:  5'- cGAUGaucuccggcaUGCUGGCCGAgggcgGCcucgGCGGCGCGc -3'
miRNA:   3'- aCUAC----------GCGACUGGCUa----CG----UGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 11436 0.68 0.72294
Target:  5'- aGGUGCGC-GACaCGccGCGCccGCGCAu -3'
miRNA:   3'- aCUACGCGaCUG-GCuaCGUGu-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 50915 0.68 0.712126
Target:  5'- cUGAUGCGCacGAgCGucaccGUGCACGgcaGCGCGa -3'
miRNA:   3'- -ACUACGCGa-CUgGC-----UACGUGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 44988 0.68 0.712126
Target:  5'- aGAUGUgGCUGGacaaCGAgccGCACGugGCGa -3'
miRNA:   3'- aCUACG-CGACUg---GCUa--CGUGUugCGU- -5'
23864 5' -53.6 NC_005262.1 + 58617 0.68 0.705598
Target:  5'- cGAUGCGCUGcACCGucagGCucgGCAgucgagcggccgggcGCGCGa -3'
miRNA:   3'- aCUACGCGAC-UGGCua--CG---UGU---------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 43855 0.68 0.701231
Target:  5'- cGGUGCGCcggcagGACCucgGCGCGAuCGCGc -3'
miRNA:   3'- aCUACGCGa-----CUGGcuaCGUGUU-GCGU- -5'
23864 5' -53.6 NC_005262.1 + 5159 0.68 0.701231
Target:  5'- cGgcGCGCUGAUCGGUG-ACGGCcgGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCUACgUGUUG--CGU- -5'
23864 5' -53.6 NC_005262.1 + 49225 0.68 0.701231
Target:  5'- cGGUGCGCgUGagcGCCGcgGCGaGACGCc -3'
miRNA:   3'- aCUACGCG-AC---UGGCuaCGUgUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 5102 0.68 0.701231
Target:  5'- cGGUGCGCgc-CCGGUuCACGAUGCc -3'
miRNA:   3'- aCUACGCGacuGGCUAcGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 17573 0.68 0.696853
Target:  5'- cGgcGCGCgaaGCCGAggagaagcuggcgGCGCAGCGCGc -3'
miRNA:   3'- aCuaCGCGac-UGGCUa------------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 5555 0.68 0.690267
Target:  5'- cGAUGCGCgGAUCGu--CACcACGCAc -3'
miRNA:   3'- aCUACGCGaCUGGCuacGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 52536 0.68 0.690267
Target:  5'- cGaAUGUGCuccUGAaacaGGUGCGCAGCGCGa -3'
miRNA:   3'- aC-UACGCG---ACUgg--CUACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 3161 0.68 0.690267
Target:  5'- cGcgGUGCUcGCCGcucgccagcGUGCGCAugGCGu -3'
miRNA:   3'- aCuaCGCGAcUGGC---------UACGUGUugCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.