miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 45837 0.66 0.785467
Target:  5'- ---gGCGCUGcguCCGAUGCgaugACGAuCGCGa -3'
miRNA:   3'- acuaCGCGACu--GGCUACG----UGUU-GCGU- -5'
23864 5' -53.6 NC_005262.1 + 27660 0.66 0.78246
Target:  5'- cGAUcGCGCUGgcggugcucgccucGCCGuaucGCGCAGCGUc -3'
miRNA:   3'- aCUA-CGCGAC--------------UGGCua--CGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 51841 0.67 0.775386
Target:  5'- -cGUGCGCgaaguGCUGAaGCGCGGCGCc -3'
miRNA:   3'- acUACGCGac---UGGCUaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 61164 0.67 0.775386
Target:  5'- gGcgGCgggcgaGCUGACgGgcGCGCGGCGCu -3'
miRNA:   3'- aCuaCG------CGACUGgCuaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 28286 0.67 0.775386
Target:  5'- ---gGCGCUGucGCCuAUGCGCGcaaGCGCGu -3'
miRNA:   3'- acuaCGCGAC--UGGcUACGUGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 59232 0.67 0.775386
Target:  5'- cGccGcCGCUGGCgcgaGAUGCGCcGCGCGc -3'
miRNA:   3'- aCuaC-GCGACUGg---CUACGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 4856 0.67 0.775386
Target:  5'- cUGcUGCGCgccGACCGAgaaGCGC-GCGCc -3'
miRNA:   3'- -ACuACGCGa--CUGGCUa--CGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 36338 0.67 0.77437
Target:  5'- cGGUGCGUgcgccgucaggcuUGAUCGAUcgGCACGugGUc -3'
miRNA:   3'- aCUACGCG-------------ACUGGCUA--CGUGUugCGu -5'
23864 5' -53.6 NC_005262.1 + 32967 0.67 0.765153
Target:  5'- cGAUGCGCgucGCCGAgacGCGCAcCGgGu -3'
miRNA:   3'- aCUACGCGac-UGGCUa--CGUGUuGCgU- -5'
23864 5' -53.6 NC_005262.1 + 12936 0.67 0.765153
Target:  5'- cGgcGCGCUGAagggCG-UGCGCGACgGCAu -3'
miRNA:   3'- aCuaCGCGACUg---GCuACGUGUUG-CGU- -5'
23864 5' -53.6 NC_005262.1 + 6760 0.67 0.765153
Target:  5'- cGuUGUGCucgUGGCCGG-GCACGAUGCc -3'
miRNA:   3'- aCuACGCG---ACUGGCUaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 17487 0.67 0.75478
Target:  5'- cGAaGCGCgcGCCGc-GCGCGACGCGu -3'
miRNA:   3'- aCUaCGCGacUGGCuaCGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 8891 0.67 0.75478
Target:  5'- aGGUGCGa--GCCGucgaacugGCGCGGCGCGa -3'
miRNA:   3'- aCUACGCgacUGGCua------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 25351 0.67 0.753736
Target:  5'- ---cGCGCUGuucaacgccaacaGCCGGUGCgGCAucaucGCGCAg -3'
miRNA:   3'- acuaCGCGAC-------------UGGCUACG-UGU-----UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 50415 0.67 0.748495
Target:  5'- gGAUGCGCgcgcccaggcgcagGAuuCCGugcugGCGCAGCGCu -3'
miRNA:   3'- aCUACGCGa-------------CU--GGCua---CGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 7248 0.67 0.748495
Target:  5'- aUGAUGCGCcccucgcgcugcucGACgGAUGCcgggaaccACGGCGCGu -3'
miRNA:   3'- -ACUACGCGa-------------CUGgCUACG--------UGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 46544 0.67 0.744279
Target:  5'- cGcgGCGCcGGCCGccGCucccGCGACGCc -3'
miRNA:   3'- aCuaCGCGaCUGGCuaCG----UGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 12003 0.67 0.744279
Target:  5'- ---gGCGUgGACaCGuuUGCACGGCGCAa -3'
miRNA:   3'- acuaCGCGaCUG-GCu-ACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 9344 0.67 0.744279
Target:  5'- cGAcguUGCGCUGAuacuuCCGGUcgGCGC-GCGCGg -3'
miRNA:   3'- aCU---ACGCGACU-----GGCUA--CGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 12870 0.67 0.744279
Target:  5'- ---cGCGCUG-CCG-UGCACGgugacgcucguGCGCAu -3'
miRNA:   3'- acuaCGCGACuGGCuACGUGU-----------UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.