Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 5' | -53.6 | NC_005262.1 | + | 1695 | 0.66 | 0.833201 |
Target: 5'- cGAcGCGgUuGCCGcgGCGgCGACGCAu -3' miRNA: 3'- aCUaCGCgAcUGGCuaCGU-GUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 46803 | 0.66 | 0.833201 |
Target: 5'- cGAgcgcGCGCUcGGCCGGcgGCAgCAGgGCAa -3' miRNA: 3'- aCUa---CGCGA-CUGGCUa-CGU-GUUgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 12870 | 0.67 | 0.744279 |
Target: 5'- ---cGCGCUG-CCG-UGCACGgugacgcucguGCGCAu -3' miRNA: 3'- acuaCGCGACuGGCuACGUGU-----------UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 46544 | 0.67 | 0.744279 |
Target: 5'- cGcgGCGCcGGCCGccGCucccGCGACGCc -3' miRNA: 3'- aCuaCGCGaCUGGCuaCG----UGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 25351 | 0.67 | 0.753736 |
Target: 5'- ---cGCGCUGuucaacgccaacaGCCGGUGCgGCAucaucGCGCAg -3' miRNA: 3'- acuaCGCGAC-------------UGGCUACG-UGU-----UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 17487 | 0.67 | 0.75478 |
Target: 5'- cGAaGCGCgcGCCGc-GCGCGACGCGu -3' miRNA: 3'- aCUaCGCGacUGGCuaCGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 6760 | 0.67 | 0.765153 |
Target: 5'- cGuUGUGCucgUGGCCGG-GCACGAUGCc -3' miRNA: 3'- aCuACGCG---ACUGGCUaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 12936 | 0.67 | 0.765153 |
Target: 5'- cGgcGCGCUGAagggCG-UGCGCGACgGCAu -3' miRNA: 3'- aCuaCGCGACUg---GCuACGUGUUG-CGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 61164 | 0.67 | 0.775386 |
Target: 5'- gGcgGCgggcgaGCUGACgGgcGCGCGGCGCu -3' miRNA: 3'- aCuaCG------CGACUGgCuaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 51841 | 0.67 | 0.775386 |
Target: 5'- -cGUGCGCgaaguGCUGAaGCGCGGCGCc -3' miRNA: 3'- acUACGCGac---UGGCUaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 28286 | 0.67 | 0.775386 |
Target: 5'- ---gGCGCUGucGCCuAUGCGCGcaaGCGCGu -3' miRNA: 3'- acuaCGCGAC--UGGcUACGUGU---UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 12003 | 0.67 | 0.744279 |
Target: 5'- ---gGCGUgGACaCGuuUGCACGGCGCAa -3' miRNA: 3'- acuaCGCGaCUG-GCu-ACGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 4856 | 0.67 | 0.775386 |
Target: 5'- cUGcUGCGCgccGACCGAgaaGCGC-GCGCc -3' miRNA: 3'- -ACuACGCGa--CUGGCUa--CGUGuUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 36338 | 0.67 | 0.77437 |
Target: 5'- cGGUGCGUgcgccgucaggcuUGAUCGAUcgGCACGugGUc -3' miRNA: 3'- aCUACGCG-------------ACUGGCUA--CGUGUugCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 32967 | 0.67 | 0.765153 |
Target: 5'- cGAUGCGCgucGCCGAgacGCGCAcCGgGu -3' miRNA: 3'- aCUACGCGac-UGGCUa--CGUGUuGCgU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 8891 | 0.67 | 0.75478 |
Target: 5'- aGGUGCGa--GCCGucgaacugGCGCGGCGCGa -3' miRNA: 3'- aCUACGCgacUGGCua------CGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 47742 | 0.67 | 0.732594 |
Target: 5'- cUGGUGCGCcgccGGCCGcgGCgaacccgGCAucGCGCGg -3' miRNA: 3'- -ACUACGCGa---CUGGCuaCG-------UGU--UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 38820 | 0.67 | 0.732594 |
Target: 5'- gGAUaCGCUGACCGucucgcGUGCucaggaaggcacgGCAGCGCu -3' miRNA: 3'- aCUAcGCGACUGGC------UACG-------------UGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 10427 | 0.67 | 0.733662 |
Target: 5'- aGAUcGuCGCUGACCGcAUGCA-GAUGCu -3' miRNA: 3'- aCUA-C-GCGACUGGC-UACGUgUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 59232 | 0.67 | 0.775386 |
Target: 5'- cGccGcCGCUGGCgcgaGAUGCGCcGCGCGc -3' miRNA: 3'- aCuaC-GCGACUGg---CUACGUGuUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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