Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 5' | -53.6 | NC_005262.1 | + | 4816 | 0.7 | 0.579282 |
Target: 5'- ---aGCGCUGGuuUCGccgGCGCGACGCAg -3' miRNA: 3'- acuaCGCGACU--GGCua-CGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 52340 | 0.7 | 0.590335 |
Target: 5'- cGA-GCGCgguaGGCaCGAUGCGCgGGCGCGg -3' miRNA: 3'- aCUaCGCGa---CUG-GCUACGUG-UUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 45829 | 0.7 | 0.590335 |
Target: 5'- cUGcAUGCGCUcGcugaugauGCCGAUGCACGA-GCAg -3' miRNA: 3'- -AC-UACGCGA-C--------UGGCUACGUGUUgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 22674 | 0.7 | 0.590335 |
Target: 5'- aGG-GCGCgGACCaGUGCGCAgACGCGc -3' miRNA: 3'- aCUaCGCGaCUGGcUACGUGU-UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 13685 | 0.7 | 0.601423 |
Target: 5'- cGA-GCGCUcGGCCGGcuucuguucGCGCGGCGCGg -3' miRNA: 3'- aCUaCGCGA-CUGGCUa--------CGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 54810 | 0.69 | 0.609202 |
Target: 5'- aGAUGCGCgcgGcguuuaGCCGAUGgauuuggaccgacaCGCAGCGCGc -3' miRNA: 3'- aCUACGCGa--C------UGGCUAC--------------GUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 15883 | 0.69 | 0.612539 |
Target: 5'- cGAUgGCGCUGAuCCGccgcGUGCGCGcgACGUg -3' miRNA: 3'- aCUA-CGCGACU-GGC----UACGUGU--UGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 22034 | 0.69 | 0.612539 |
Target: 5'- -cGUGCGCUGcGCCGGUGC-CGGCa-- -3' miRNA: 3'- acUACGCGAC-UGGCUACGuGUUGcgu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 8782 | 0.69 | 0.623672 |
Target: 5'- ---cGCGCcGACCGcGUGCGCGAgGUAc -3' miRNA: 3'- acuaCGCGaCUGGC-UACGUGUUgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 28470 | 0.69 | 0.623672 |
Target: 5'- cGAaaUGCGUgaccgugaUGGCCGAUGCGCcguuuuGCGCc -3' miRNA: 3'- aCU--ACGCG--------ACUGGCUACGUGu-----UGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 51054 | 0.69 | 0.634813 |
Target: 5'- gGAgGCGCagccacUGACCGAUGaCGCggUGCu -3' miRNA: 3'- aCUaCGCG------ACUGGCUAC-GUGuuGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 24592 | 0.69 | 0.650404 |
Target: 5'- cGGUGCGCUGAcaaggugagcccguaCCGGaggaaUGCGCAAUGa- -3' miRNA: 3'- aCUACGCGACU---------------GGCU-----ACGUGUUGCgu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 50423 | 0.69 | 0.657077 |
Target: 5'- gGA-GCGCgagGGCCGcGUGCACGucgucgugccGCGCGa -3' miRNA: 3'- aCUaCGCGa--CUGGC-UACGUGU----------UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 10694 | 0.69 | 0.668179 |
Target: 5'- cUGcAUGCGCaGAUCGAggccGCGCGcACGCGg -3' miRNA: 3'- -AC-UACGCGaCUGGCUa---CGUGU-UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 53441 | 0.69 | 0.668179 |
Target: 5'- uUGAUGCGCcccucgauguaGACaGAUGCGCccuuGCGCAg -3' miRNA: 3'- -ACUACGCGa----------CUGgCUACGUGu---UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 5555 | 0.68 | 0.690267 |
Target: 5'- cGAUGCGCgGAUCGu--CACcACGCAc -3' miRNA: 3'- aCUACGCGaCUGGCuacGUGuUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 52536 | 0.68 | 0.690267 |
Target: 5'- cGaAUGUGCuccUGAaacaGGUGCGCAGCGCGa -3' miRNA: 3'- aC-UACGCG---ACUgg--CUACGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 53084 | 0.68 | 0.690267 |
Target: 5'- gGA-GCGCcGGCCGcGUGCGCGcggccucgaucuGCGCAu -3' miRNA: 3'- aCUaCGCGaCUGGC-UACGUGU------------UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 3161 | 0.68 | 0.690267 |
Target: 5'- cGcgGUGCUcGCCGcucgccagcGUGCGCAugGCGu -3' miRNA: 3'- aCuaCGCGAcUGGC---------UACGUGUugCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 17573 | 0.68 | 0.696853 |
Target: 5'- cGgcGCGCgaaGCCGAggagaagcuggcgGCGCAGCGCGc -3' miRNA: 3'- aCuaCGCGac-UGGCUa------------CGUGUUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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