miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 61650 1.09 0.001542
Target:  5'- cUGAUGCGCUGACCGAUGCACAACGCAg -3'
miRNA:   3'- -ACUACGCGACUGGCUACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 41551 0.77 0.245972
Target:  5'- gUGAUGCGCaGGCCGGccggcgUGgGCGGCGCGg -3'
miRNA:   3'- -ACUACGCGaCUGGCU------ACgUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53579 0.76 0.272896
Target:  5'- ---cGCGCUGACCGGcagcaUGUACcGCGCAa -3'
miRNA:   3'- acuaCGCGACUGGCU-----ACGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 20618 0.76 0.272896
Target:  5'- aGAUGUcCUGGCCGAUGCACAG-GUAc -3'
miRNA:   3'- aCUACGcGACUGGCUACGUGUUgCGU- -5'
23864 5' -53.6 NC_005262.1 + 53060 0.75 0.309812
Target:  5'- cGAcGCGCUGACCG--GCGCGAuCGCGa -3'
miRNA:   3'- aCUaCGCGACUGGCuaCGUGUU-GCGU- -5'
23864 5' -53.6 NC_005262.1 + 31055 0.75 0.333728
Target:  5'- ---gGUGCUGACCGAcGC-CGACGCGc -3'
miRNA:   3'- acuaCGCGACUGGCUaCGuGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 52218 0.74 0.358108
Target:  5'- cGA-GCGCUGGCCGccGCcggcauaGCAGCGCGc -3'
miRNA:   3'- aCUaCGCGACUGGCuaCG-------UGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 1058 0.73 0.398342
Target:  5'- cUGcgGCGCUGACCGccaGCGCGccgaucagggugcguGCGCGa -3'
miRNA:   3'- -ACuaCGCGACUGGCua-CGUGU---------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 30150 0.73 0.422872
Target:  5'- cGAaGCGCcGGCgGAUGC-CGACGCGa -3'
miRNA:   3'- aCUaCGCGaCUGgCUACGuGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 23780 0.73 0.432545
Target:  5'- cUGAU-CGCUGACCuucGAUGCGaAGCGCAc -3'
miRNA:   3'- -ACUAcGCGACUGG---CUACGUgUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 13397 0.73 0.432545
Target:  5'- cGcgGCGCUGAUCGccGCGCGguuCGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCuaCGUGUu--GCGU- -5'
23864 5' -53.6 NC_005262.1 + 42303 0.72 0.442345
Target:  5'- cGGUGCGCcacugguacgcaUGGCCGAUGCcccaGCAguagcggcACGCAa -3'
miRNA:   3'- aCUACGCG------------ACUGGCUACG----UGU--------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 51761 0.72 0.492087
Target:  5'- cUGGcUGCGCagcacgggaUGACCGAUGCGCAgguccaggcugucACGUAc -3'
miRNA:   3'- -ACU-ACGCG---------ACUGGCUACGUGU-------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 40213 0.71 0.499406
Target:  5'- cUGGUGCGCUcGACUGGuacuguugaagucgUGCGCGugaccgcGCGCAg -3'
miRNA:   3'- -ACUACGCGA-CUGGCU--------------ACGUGU-------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 38926 0.7 0.556227
Target:  5'- ---cGCGCcGGCgGAUGCACAucgccgagcacugGCGCAg -3'
miRNA:   3'- acuaCGCGaCUGgCUACGUGU-------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 51397 0.7 0.557319
Target:  5'- ---cGCGcCUGACCGuGUGCACcGCGUg -3'
miRNA:   3'- acuaCGC-GACUGGC-UACGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 6251 0.7 0.561694
Target:  5'- cGAUGCGCgUGACCGGuacgaccugaUcgcggucgaugcccgGCGCGACGCu -3'
miRNA:   3'- aCUACGCG-ACUGGCU----------A---------------CGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 50084 0.7 0.568274
Target:  5'- cGcUGCGCcGACCGAacccGCGCcGCGCGa -3'
miRNA:   3'- aCuACGCGaCUGGCUa---CGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 17111 0.7 0.572671
Target:  5'- cGcgGCGCUGACugcaucggcgggcguCGGUGC-CGGCGCc -3'
miRNA:   3'- aCuaCGCGACUG---------------GCUACGuGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 4816 0.7 0.579282
Target:  5'- ---aGCGCUGGuuUCGccgGCGCGACGCAg -3'
miRNA:   3'- acuaCGCGACU--GGCua-CGUGUUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.