miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 463 0.67 0.744279
Target:  5'- uUGAggGCGUUGACCucgGCgacGCGGCGCGc -3'
miRNA:   3'- -ACUa-CGCGACUGGcuaCG---UGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 1058 0.73 0.398342
Target:  5'- cUGcgGCGCUGACCGccaGCGCGccgaucagggugcguGCGCGa -3'
miRNA:   3'- -ACuaCGCGACUGGCua-CGUGU---------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 1695 0.66 0.833201
Target:  5'- cGAcGCGgUuGCCGcgGCGgCGACGCAu -3'
miRNA:   3'- aCUaCGCgAcUGGCuaCGU-GUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 2910 0.66 0.814685
Target:  5'- cGGUGCGCacGGCCGAcuucaucGCGCuuucgccGCGCAu -3'
miRNA:   3'- aCUACGCGa-CUGGCUa------CGUGu------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 3161 0.68 0.690267
Target:  5'- cGcgGUGCUcGCCGcucgccagcGUGCGCAugGCGu -3'
miRNA:   3'- aCuaCGCGAcUGGC---------UACGUGUugCGU- -5'
23864 5' -53.6 NC_005262.1 + 4816 0.7 0.579282
Target:  5'- ---aGCGCUGGuuUCGccgGCGCGACGCAg -3'
miRNA:   3'- acuaCGCGACU--GGCua-CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 4856 0.67 0.775386
Target:  5'- cUGcUGCGCgccGACCGAgaaGCGC-GCGCc -3'
miRNA:   3'- -ACuACGCGa--CUGGCUa--CGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 5102 0.68 0.701231
Target:  5'- cGGUGCGCgc-CCGGUuCACGAUGCc -3'
miRNA:   3'- aCUACGCGacuGGCUAcGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 5159 0.68 0.701231
Target:  5'- cGgcGCGCUGAUCGGUG-ACGGCcgGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCUACgUGUUG--CGU- -5'
23864 5' -53.6 NC_005262.1 + 5555 0.68 0.690267
Target:  5'- cGAUGCGCgGAUCGu--CACcACGCAc -3'
miRNA:   3'- aCUACGCGaCUGGCuacGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 6251 0.7 0.561694
Target:  5'- cGAUGCGCgUGACCGGuacgaccugaUcgcggucgaugcccgGCGCGACGCu -3'
miRNA:   3'- aCUACGCG-ACUGGCU----------A---------------CGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 6760 0.67 0.765153
Target:  5'- cGuUGUGCucgUGGCCGG-GCACGAUGCc -3'
miRNA:   3'- aCuACGCG---ACUGGCUaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 7248 0.67 0.748495
Target:  5'- aUGAUGCGCcccucgcgcugcucGACgGAUGCcgggaaccACGGCGCGu -3'
miRNA:   3'- -ACUACGCGa-------------CUGgCUACG--------UGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 8782 0.69 0.623672
Target:  5'- ---cGCGCcGACCGcGUGCGCGAgGUAc -3'
miRNA:   3'- acuaCGCGaCUGGC-UACGUGUUgCGU- -5'
23864 5' -53.6 NC_005262.1 + 8891 0.67 0.75478
Target:  5'- aGGUGCGa--GCCGucgaacugGCGCGGCGCGa -3'
miRNA:   3'- aCUACGCgacUGGCua------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 9344 0.67 0.744279
Target:  5'- cGAcguUGCGCUGAuacuuCCGGUcgGCGC-GCGCGg -3'
miRNA:   3'- aCU---ACGCGACU-----GGCUA--CGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 10427 0.67 0.733662
Target:  5'- aGAUcGuCGCUGACCGcAUGCA-GAUGCu -3'
miRNA:   3'- aCUA-C-GCGACUGGC-UACGUgUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 10694 0.69 0.668179
Target:  5'- cUGcAUGCGCaGAUCGAggccGCGCGcACGCGg -3'
miRNA:   3'- -AC-UACGCGaCUGGCUa---CGUGU-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 11436 0.68 0.72294
Target:  5'- aGGUGCGC-GACaCGccGCGCccGCGCAu -3'
miRNA:   3'- aCUACGCGaCUG-GCuaCGUGu-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 12003 0.67 0.744279
Target:  5'- ---gGCGUgGACaCGuuUGCACGGCGCAa -3'
miRNA:   3'- acuaCGCGaCUG-GCu-ACGUGUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.