miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 5102 0.68 0.701231
Target:  5'- cGGUGCGCgc-CCGGUuCACGAUGCc -3'
miRNA:   3'- aCUACGCGacuGGCUAcGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 22674 0.7 0.590335
Target:  5'- aGG-GCGCgGACCaGUGCGCAgACGCGc -3'
miRNA:   3'- aCUaCGCGaCUGGcUACGUGU-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 54810 0.69 0.609202
Target:  5'- aGAUGCGCgcgGcguuuaGCCGAUGgauuuggaccgacaCGCAGCGCGc -3'
miRNA:   3'- aCUACGCGa--C------UGGCUAC--------------GUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 15883 0.69 0.612539
Target:  5'- cGAUgGCGCUGAuCCGccgcGUGCGCGcgACGUg -3'
miRNA:   3'- aCUA-CGCGACU-GGC----UACGUGU--UGCGu -5'
23864 5' -53.6 NC_005262.1 + 24592 0.69 0.650404
Target:  5'- cGGUGCGCUGAcaaggugagcccguaCCGGaggaaUGCGCAAUGa- -3'
miRNA:   3'- aCUACGCGACU---------------GGCU-----ACGUGUUGCgu -5'
23864 5' -53.6 NC_005262.1 + 50423 0.69 0.657077
Target:  5'- gGA-GCGCgagGGCCGcGUGCACGucgucgugccGCGCGa -3'
miRNA:   3'- aCUaCGCGa--CUGGC-UACGUGU----------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 10694 0.69 0.668179
Target:  5'- cUGcAUGCGCaGAUCGAggccGCGCGcACGCGg -3'
miRNA:   3'- -AC-UACGCGaCUGGCUa---CGUGU-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 5555 0.68 0.690267
Target:  5'- cGAUGCGCgGAUCGu--CACcACGCAc -3'
miRNA:   3'- aCUACGCGaCUGGCuacGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 17573 0.68 0.696853
Target:  5'- cGgcGCGCgaaGCCGAggagaagcuggcgGCGCAGCGCGc -3'
miRNA:   3'- aCuaCGCGac-UGGCUa------------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 45829 0.7 0.590335
Target:  5'- cUGcAUGCGCUcGcugaugauGCCGAUGCACGA-GCAg -3'
miRNA:   3'- -AC-UACGCGA-C--------UGGCUACGUGUUgCGU- -5'
23864 5' -53.6 NC_005262.1 + 58722 0.7 0.579282
Target:  5'- cGAgGCGCUGACCGcgGaggaauuCGGCGCc -3'
miRNA:   3'- aCUaCGCGACUGGCuaCgu-----GUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 4816 0.7 0.579282
Target:  5'- ---aGCGCUGGuuUCGccgGCGCGACGCAg -3'
miRNA:   3'- acuaCGCGACU--GGCua-CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53060 0.75 0.309812
Target:  5'- cGAcGCGCUGACCG--GCGCGAuCGCGa -3'
miRNA:   3'- aCUaCGCGACUGGCuaCGUGUU-GCGU- -5'
23864 5' -53.6 NC_005262.1 + 31055 0.75 0.333728
Target:  5'- ---gGUGCUGACCGAcGC-CGACGCGc -3'
miRNA:   3'- acuaCGCGACUGGCUaCGuGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 30150 0.73 0.422872
Target:  5'- cGAaGCGCcGGCgGAUGC-CGACGCGa -3'
miRNA:   3'- aCUaCGCGaCUGgCUACGuGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 23780 0.73 0.432545
Target:  5'- cUGAU-CGCUGACCuucGAUGCGaAGCGCAc -3'
miRNA:   3'- -ACUAcGCGACUGG---CUACGUgUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 51761 0.72 0.492087
Target:  5'- cUGGcUGCGCagcacgggaUGACCGAUGCGCAgguccaggcugucACGUAc -3'
miRNA:   3'- -ACU-ACGCG---------ACUGGCUACGUGU-------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 40213 0.71 0.499406
Target:  5'- cUGGUGCGCUcGACUGGuacuguugaagucgUGCGCGugaccgcGCGCAg -3'
miRNA:   3'- -ACUACGCGA-CUGGCU--------------ACGUGU-------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 51397 0.7 0.557319
Target:  5'- ---cGCGcCUGACCGuGUGCACcGCGUg -3'
miRNA:   3'- acuaCGC-GACUGGC-UACGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 50084 0.7 0.568274
Target:  5'- cGcUGCGCcGACCGAacccGCGCcGCGCGa -3'
miRNA:   3'- aCuACGCGaCUGGCUa---CGUGuUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.