Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 5' | -53.6 | NC_005262.1 | + | 57613 | 0.66 | 0.833201 |
Target: 5'- ---cGCGCcuaUGACCGcgagGCGCAggaGCGCGu -3' miRNA: 3'- acuaCGCG---ACUGGCua--CGUGU---UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 32967 | 0.67 | 0.765153 |
Target: 5'- cGAUGCGCgucGCCGAgacGCGCAcCGgGu -3' miRNA: 3'- aCUACGCGac-UGGCUa--CGUGUuGCgU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 50415 | 0.67 | 0.748495 |
Target: 5'- gGAUGCGCgcgcccaggcgcagGAuuCCGugcugGCGCAGCGCu -3' miRNA: 3'- aCUACGCGa-------------CU--GGCua---CGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 61650 | 1.09 | 0.001542 |
Target: 5'- cUGAUGCGCUGACCGAUGCACAACGCAg -3' miRNA: 3'- -ACUACGCGACUGGCUACGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 47073 | 0.66 | 0.824046 |
Target: 5'- ---cGUGCUGcCCGGUGCGCAcagGgGUAu -3' miRNA: 3'- acuaCGCGACuGGCUACGUGU---UgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 48190 | 0.66 | 0.814685 |
Target: 5'- cGAUGCGCUccuGCCGcacGCGCuccucGCGCGc -3' miRNA: 3'- aCUACGCGAc--UGGCua-CGUGu----UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 54180 | 0.66 | 0.808974 |
Target: 5'- uUGAUGUGCcacgGaaagcgcaugaaagcGCCGuUGCACAcgGCGCAg -3' miRNA: 3'- -ACUACGCGa---C---------------UGGCuACGUGU--UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 12760 | 0.66 | 0.805128 |
Target: 5'- aUGAUGUGCccgucguucGACaCGAU-CACGGCGCGg -3' miRNA: 3'- -ACUACGCGa--------CUG-GCUAcGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 43669 | 0.66 | 0.795385 |
Target: 5'- cUGGUGCGUcGGCaGggGCAUGACGUg -3' miRNA: 3'- -ACUACGCGaCUGgCuaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 36338 | 0.67 | 0.77437 |
Target: 5'- cGGUGCGUgcgccgucaggcuUGAUCGAUcgGCACGugGUc -3' miRNA: 3'- aCUACGCG-------------ACUGGCUA--CGUGUugCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 27660 | 0.66 | 0.78246 |
Target: 5'- cGAUcGCGCUGgcggugcucgccucGCCGuaucGCGCAGCGUc -3' miRNA: 3'- aCUA-CGCGAC--------------UGGCua--CGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 58148 | 0.66 | 0.795385 |
Target: 5'- aUGGUGCGC-GGCauccucaaggUGAUGCGCAACucggGCGa -3' miRNA: 3'- -ACUACGCGaCUG----------GCUACGUGUUG----CGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 46803 | 0.66 | 0.833201 |
Target: 5'- cGAgcgcGCGCUcGGCCGGcgGCAgCAGgGCAa -3' miRNA: 3'- aCUa---CGCGA-CUGGCUa-CGU-GUUgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 59232 | 0.67 | 0.775386 |
Target: 5'- cGccGcCGCUGGCgcgaGAUGCGCcGCGCGc -3' miRNA: 3'- aCuaC-GCGACUGg---CUACGUGuUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 1695 | 0.66 | 0.833201 |
Target: 5'- cGAcGCGgUuGCCGcgGCGgCGACGCAu -3' miRNA: 3'- aCUaCGCgAcUGGCuaCGU-GUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 60620 | 0.66 | 0.805128 |
Target: 5'- aGAUGCGCgcGAUUGGcgaccUGCGCAuGCGCc -3' miRNA: 3'- aCUACGCGa-CUGGCU-----ACGUGU-UGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 4856 | 0.67 | 0.775386 |
Target: 5'- cUGcUGCGCgccGACCGAgaaGCGC-GCGCc -3' miRNA: 3'- -ACuACGCGa--CUGGCUa--CGUGuUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 8891 | 0.67 | 0.75478 |
Target: 5'- aGGUGCGa--GCCGucgaacugGCGCGGCGCGa -3' miRNA: 3'- aCUACGCgacUGGCua------CGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 45655 | 0.66 | 0.824046 |
Target: 5'- ---cGCGCUcccGGuuGAgGCGCAGCGCu -3' miRNA: 3'- acuaCGCGA---CUggCUaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 2910 | 0.66 | 0.814685 |
Target: 5'- cGGUGCGCacGGCCGAcuucaucGCGCuuucgccGCGCAu -3' miRNA: 3'- aCUACGCGa-CUGGCUa------CGUGu------UGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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