miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 61778 0.66 0.830477
Target:  5'- ---cGCGCcGACCGaccagcgcguuuucGccUGCGCGGCGCAu -3'
miRNA:   3'- acuaCGCGaCUGGC--------------U--ACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 61650 1.09 0.001542
Target:  5'- cUGAUGCGCUGACCGAUGCACAACGCAg -3'
miRNA:   3'- -ACUACGCGACUGGCUACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 61164 0.67 0.775386
Target:  5'- gGcgGCgggcgaGCUGACgGgcGCGCGGCGCu -3'
miRNA:   3'- aCuaCG------CGACUGgCuaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 60620 0.66 0.805128
Target:  5'- aGAUGCGCgcGAUUGGcgaccUGCGCAuGCGCc -3'
miRNA:   3'- aCUACGCGa-CUGGCU-----ACGUGU-UGCGu -5'
23864 5' -53.6 NC_005262.1 + 60476 0.66 0.824971
Target:  5'- aUGAcgcUGCGCgaucagggcgagacGCCGGgccGCGCGGCGCAg -3'
miRNA:   3'- -ACU---ACGCGac------------UGGCUa--CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 59232 0.67 0.775386
Target:  5'- cGccGcCGCUGGCgcgaGAUGCGCcGCGCGc -3'
miRNA:   3'- aCuaC-GCGACUGg---CUACGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 58722 0.7 0.579282
Target:  5'- cGAgGCGCUGACCGcgGaggaauuCGGCGCc -3'
miRNA:   3'- aCUaCGCGACUGGCuaCgu-----GUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 58617 0.68 0.705598
Target:  5'- cGAUGCGCUGcACCGucagGCucgGCAgucgagcggccgggcGCGCGa -3'
miRNA:   3'- aCUACGCGAC-UGGCua--CG---UGU---------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 58148 0.66 0.795385
Target:  5'- aUGGUGCGC-GGCauccucaaggUGAUGCGCAACucggGCGa -3'
miRNA:   3'- -ACUACGCGaCUG----------GCUACGUGUUG----CGU- -5'
23864 5' -53.6 NC_005262.1 + 57613 0.66 0.833201
Target:  5'- ---cGCGCcuaUGACCGcgagGCGCAggaGCGCGu -3'
miRNA:   3'- acuaCGCG---ACUGGCua--CGUGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 54810 0.69 0.609202
Target:  5'- aGAUGCGCgcgGcguuuaGCCGAUGgauuuggaccgacaCGCAGCGCGc -3'
miRNA:   3'- aCUACGCGa--C------UGGCUAC--------------GUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 54427 0.66 0.824046
Target:  5'- gGAgGCGCaGGCCGccGCGC-GCGCc -3'
miRNA:   3'- aCUaCGCGaCUGGCuaCGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 54180 0.66 0.808974
Target:  5'- uUGAUGUGCcacgGaaagcgcaugaaagcGCCGuUGCACAcgGCGCAg -3'
miRNA:   3'- -ACUACGCGa---C---------------UGGCuACGUGU--UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53579 0.76 0.272896
Target:  5'- ---cGCGCUGACCGGcagcaUGUACcGCGCAa -3'
miRNA:   3'- acuaCGCGACUGGCU-----ACGUGuUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53441 0.69 0.668179
Target:  5'- uUGAUGCGCcccucgauguaGACaGAUGCGCccuuGCGCAg -3'
miRNA:   3'- -ACUACGCGa----------CUGgCUACGUGu---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53084 0.68 0.690267
Target:  5'- gGA-GCGCcGGCCGcGUGCGCGcggccucgaucuGCGCAu -3'
miRNA:   3'- aCUaCGCGaCUGGC-UACGUGU------------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 53060 0.75 0.309812
Target:  5'- cGAcGCGCUGACCG--GCGCGAuCGCGa -3'
miRNA:   3'- aCUaCGCGACUGGCuaCGUGUU-GCGU- -5'
23864 5' -53.6 NC_005262.1 + 52536 0.68 0.690267
Target:  5'- cGaAUGUGCuccUGAaacaGGUGCGCAGCGCGa -3'
miRNA:   3'- aC-UACGCG---ACUgg--CUACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 52340 0.7 0.590335
Target:  5'- cGA-GCGCgguaGGCaCGAUGCGCgGGCGCGg -3'
miRNA:   3'- aCUaCGCGa---CUG-GCUACGUG-UUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 52218 0.74 0.358108
Target:  5'- cGA-GCGCUGGCCGccGCcggcauaGCAGCGCGc -3'
miRNA:   3'- aCUaCGCGACUGGCuaCG-------UGUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.