miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 12760 0.66 0.805128
Target:  5'- aUGAUGUGCccgucguucGACaCGAU-CACGGCGCGg -3'
miRNA:   3'- -ACUACGCGa--------CUG-GCUAcGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 12870 0.67 0.744279
Target:  5'- ---cGCGCUG-CCG-UGCACGgugacgcucguGCGCAu -3'
miRNA:   3'- acuaCGCGACuGGCuACGUGU-----------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 12936 0.67 0.765153
Target:  5'- cGgcGCGCUGAagggCG-UGCGCGACgGCAu -3'
miRNA:   3'- aCuaCGCGACUg---GCuACGUGUUG-CGU- -5'
23864 5' -53.6 NC_005262.1 + 13397 0.73 0.432545
Target:  5'- cGcgGCGCUGAUCGccGCGCGguuCGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCuaCGUGUu--GCGU- -5'
23864 5' -53.6 NC_005262.1 + 13685 0.7 0.601423
Target:  5'- cGA-GCGCUcGGCCGGcuucuguucGCGCGGCGCGg -3'
miRNA:   3'- aCUaCGCGA-CUGGCUa--------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 15883 0.69 0.612539
Target:  5'- cGAUgGCGCUGAuCCGccgcGUGCGCGcgACGUg -3'
miRNA:   3'- aCUA-CGCGACU-GGC----UACGUGU--UGCGu -5'
23864 5' -53.6 NC_005262.1 + 16353 0.66 0.805128
Target:  5'- cGgcGCGCUGAUCGgcGC-CGcCGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCuaCGuGUuGCGU- -5'
23864 5' -53.6 NC_005262.1 + 17111 0.7 0.572671
Target:  5'- cGcgGCGCUGACugcaucggcgggcguCGGUGC-CGGCGCc -3'
miRNA:   3'- aCuaCGCGACUG---------------GCUACGuGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 17487 0.67 0.75478
Target:  5'- cGAaGCGCgcGCCGc-GCGCGACGCGu -3'
miRNA:   3'- aCUaCGCGacUGGCuaCGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 17573 0.68 0.696853
Target:  5'- cGgcGCGCgaaGCCGAggagaagcuggcgGCGCAGCGCGc -3'
miRNA:   3'- aCuaCGCGac-UGGCUa------------CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 20618 0.76 0.272896
Target:  5'- aGAUGUcCUGGCCGAUGCACAG-GUAc -3'
miRNA:   3'- aCUACGcGACUGGCUACGUGUUgCGU- -5'
23864 5' -53.6 NC_005262.1 + 22034 0.69 0.612539
Target:  5'- -cGUGCGCUGcGCCGGUGC-CGGCa-- -3'
miRNA:   3'- acUACGCGAC-UGGCUACGuGUUGcgu -5'
23864 5' -53.6 NC_005262.1 + 22674 0.7 0.590335
Target:  5'- aGG-GCGCgGACCaGUGCGCAgACGCGc -3'
miRNA:   3'- aCUaCGCGaCUGGcUACGUGU-UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 23780 0.73 0.432545
Target:  5'- cUGAU-CGCUGACCuucGAUGCGaAGCGCAc -3'
miRNA:   3'- -ACUAcGCGACUGG---CUACGUgUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 24069 0.67 0.733662
Target:  5'- uUGAUGCGCUGcGCC--UGCu--GCGCGa -3'
miRNA:   3'- -ACUACGCGAC-UGGcuACGuguUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 24592 0.69 0.650404
Target:  5'- cGGUGCGCUGAcaaggugagcccguaCCGGaggaaUGCGCAAUGa- -3'
miRNA:   3'- aCUACGCGACU---------------GGCU-----ACGUGUUGCgu -5'
23864 5' -53.6 NC_005262.1 + 25351 0.67 0.753736
Target:  5'- ---cGCGCUGuucaacgccaacaGCCGGUGCgGCAucaucGCGCAg -3'
miRNA:   3'- acuaCGCGAC-------------UGGCUACG-UGU-----UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 27660 0.66 0.78246
Target:  5'- cGAUcGCGCUGgcggugcucgccucGCCGuaucGCGCAGCGUc -3'
miRNA:   3'- aCUA-CGCGAC--------------UGGCua--CGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 28286 0.67 0.775386
Target:  5'- ---gGCGCUGucGCCuAUGCGCGcaaGCGCGu -3'
miRNA:   3'- acuaCGCGAC--UGGcUACGUGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 28470 0.69 0.623672
Target:  5'- cGAaaUGCGUgaccgugaUGGCCGAUGCGCcguuuuGCGCc -3'
miRNA:   3'- aCU--ACGCG--------ACUGGCUACGUGu-----UGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.