miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 42976 0.69 0.698475
Target:  5'- cGCCcCGCGAUGuucccugucgauucGCGGCUGCUCg---- -3'
miRNA:   3'- -CGGuGCGCUAC--------------UGCUGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 44429 0.71 0.540065
Target:  5'- aGCUACGCGcAUGACGGCuCGUUgUGUg- -3'
miRNA:   3'- -CGGUGCGC-UACUGCUG-GCGAgAUAgc -5'
23865 3' -54 NC_005262.1 + 37878 0.68 0.721792
Target:  5'- cGUCGCGCG-UGGCGACguaccaugcgcgcUGCUCggcAUCGa -3'
miRNA:   3'- -CGGUGCGCuACUGCUG-------------GCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 34136 0.67 0.783884
Target:  5'- gGCUGCGCGGgcgcgGGCGgcauGCCGCUCg---- -3'
miRNA:   3'- -CGGUGCGCUa----CUGC----UGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 13409 0.71 0.5549
Target:  5'- cGCCGCGCGGuucgcgucgccacggUcGACGaaugcGCCGCUCgcgGUCGu -3'
miRNA:   3'- -CGGUGCGCU---------------A-CUGC-----UGGCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 18730 0.7 0.593537
Target:  5'- cGCgCGCGUGAUGcccuggaauCGGCCGCUCgccggGUUGa -3'
miRNA:   3'- -CG-GUGCGCUACu--------GCUGGCGAGa----UAGC- -5'
23865 3' -54 NC_005262.1 + 45846 0.72 0.508757
Target:  5'- uCCgAUGCGAUGACGAUCGCgacCUGcUCGc -3'
miRNA:   3'- cGG-UGCGCUACUGCUGGCGa--GAU-AGC- -5'
23865 3' -54 NC_005262.1 + 8539 0.73 0.429498
Target:  5'- cGCCgaguGCGUGAUGAUGACCGCaUCcggAUUGu -3'
miRNA:   3'- -CGG----UGCGCUACUGCUGGCG-AGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 32514 0.67 0.783884
Target:  5'- cGCCGCGaucuuggcCGcgGACGACUGCggCUgccgAUCGa -3'
miRNA:   3'- -CGGUGC--------GCuaCUGCUGGCGa-GA----UAGC- -5'
23865 3' -54 NC_005262.1 + 9968 0.67 0.793583
Target:  5'- cGCCGCGcCGGUGGucagcuCGAugcCCGUgccgCUGUCGa -3'
miRNA:   3'- -CGGUGC-GCUACU------GCU---GGCGa---GAUAGC- -5'
23865 3' -54 NC_005262.1 + 41222 0.68 0.753908
Target:  5'- cGCCGCGC-AUG-CGGCCGCUaaggcCGg -3'
miRNA:   3'- -CGGUGCGcUACuGCUGGCGAgaua-GC- -5'
23865 3' -54 NC_005262.1 + 42032 0.68 0.753908
Target:  5'- uGCUugGCGAcguUGACGcguGCCGCUgCgcgAUCu -3'
miRNA:   3'- -CGGugCGCU---ACUGC---UGGCGA-Ga--UAGc -5'
23865 3' -54 NC_005262.1 + 14418 0.67 0.783884
Target:  5'- cGCC-CGCGGUGAUGAaCGCgcgcGUCGc -3'
miRNA:   3'- -CGGuGCGCUACUGCUgGCGaga-UAGC- -5'
23865 3' -54 NC_005262.1 + 25461 0.71 0.571997
Target:  5'- cGCUGCGCGA-GGCGauGCCGCUCg---- -3'
miRNA:   3'- -CGGUGCGCUaCUGC--UGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 38443 0.66 0.839416
Target:  5'- aUCACGCcgGAcGACGGCaCGCUC-GUCGc -3'
miRNA:   3'- cGGUGCG--CUaCUGCUG-GCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 53266 0.66 0.839416
Target:  5'- aCCGCGUGAaaccgGGCGGCaUGCUCguguUCGu -3'
miRNA:   3'- cGGUGCGCUa----CUGCUG-GCGAGau--AGC- -5'
23865 3' -54 NC_005262.1 + 5079 0.66 0.839416
Target:  5'- gGCgGCGCGu--GCGACCgGCUCgg-CGg -3'
miRNA:   3'- -CGgUGCGCuacUGCUGG-CGAGauaGC- -5'
23865 3' -54 NC_005262.1 + 34208 0.66 0.830638
Target:  5'- cGCC-CGCGAUcgcggcuucgGGCGACaCGCUCg---- -3'
miRNA:   3'- -CGGuGCGCUA----------CUGCUG-GCGAGauagc -5'
23865 3' -54 NC_005262.1 + 50278 0.68 0.722843
Target:  5'- cGCC-CGCGccggccgagcccGUGACGGCCGCgcggAUUGa -3'
miRNA:   3'- -CGGuGCGC------------UACUGCUGGCGaga-UAGC- -5'
23865 3' -54 NC_005262.1 + 12522 0.68 0.743659
Target:  5'- uGCCGCGCGAc-GCGAUCGcCUCcaUGUUGc -3'
miRNA:   3'- -CGGUGCGCUacUGCUGGC-GAG--AUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.