miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 21117 0.66 0.856328
Target:  5'- gGCCACGCGugcgGGCGccACgGCUCg--Ca -3'
miRNA:   3'- -CGGUGCGCua--CUGC--UGgCGAGauaGc -5'
23865 3' -54 NC_005262.1 + 52418 0.68 0.7333
Target:  5'- aGCCGCGCGcgaacguCGugCGCUUcAUCGu -3'
miRNA:   3'- -CGGUGCGCuacu---GCugGCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 37878 0.68 0.721792
Target:  5'- cGUCGCGCG-UGGCGACguaccaugcgcgcUGCUCggcAUCGa -3'
miRNA:   3'- -CGGUGCGCuACUGCUG-------------GCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 61279 1.12 0.001136
Target:  5'- cGCCACGCGAUGACGACCGCUCUAUCGg -3'
miRNA:   3'- -CGGUGCGCUACUGCUGGCGAGAUAGC- -5'
23865 3' -54 NC_005262.1 + 40443 0.66 0.830638
Target:  5'- cGCCGCGCGcuucacGcCGGCCGUg--GUCGa -3'
miRNA:   3'- -CGGUGCGCua----CuGCUGGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 738 0.66 0.830638
Target:  5'- cGCC-CGCGAUGACGuGCCgGCgcaugCUGg-- -3'
miRNA:   3'- -CGGuGCGCUACUGC-UGG-CGa----GAUagc -5'
23865 3' -54 NC_005262.1 + 20743 0.67 0.812479
Target:  5'- cGgCGCGCGGUGcCGGCCGg---GUCGa -3'
miRNA:   3'- -CgGUGCGCUACuGCUGGCgagaUAGC- -5'
23865 3' -54 NC_005262.1 + 12479 0.67 0.793583
Target:  5'- uGCCGCGCGcgGAUGcGCCcaUCUgGUCGa -3'
miRNA:   3'- -CGGUGCGCuaCUGC-UGGcgAGA-UAGC- -5'
23865 3' -54 NC_005262.1 + 34136 0.67 0.783884
Target:  5'- gGCUGCGCGGgcgcgGGCGgcauGCCGCUCg---- -3'
miRNA:   3'- -CGGUGCGCUa----CUGC----UGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 58242 0.68 0.743659
Target:  5'- --uGCGUGGUGACGAuCCGCgc-AUCGa -3'
miRNA:   3'- cggUGCGCUACUGCU-GGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 41222 0.68 0.753908
Target:  5'- cGCCGCGC-AUG-CGGCCGCUaaggcCGg -3'
miRNA:   3'- -CGGUGCGcUACuGCUGGCGAgaua-GC- -5'
23865 3' -54 NC_005262.1 + 32514 0.67 0.783884
Target:  5'- cGCCGCGaucuuggcCGcgGACGACUGCggCUgccgAUCGa -3'
miRNA:   3'- -CGGUGC--------GCuaCUGCUGGCGa-GA----UAGC- -5'
23865 3' -54 NC_005262.1 + 4104 0.66 0.847983
Target:  5'- cGCC-CGCG-UGGCGGCaCGC-CgAUCGu -3'
miRNA:   3'- -CGGuGCGCuACUGCUG-GCGaGaUAGC- -5'
23865 3' -54 NC_005262.1 + 6856 0.68 0.753908
Target:  5'- cCCGCGCGGaucGGCGugCGCUUc-UCGa -3'
miRNA:   3'- cGGUGCGCUa--CUGCugGCGAGauAGC- -5'
23865 3' -54 NC_005262.1 + 28707 0.66 0.847136
Target:  5'- cGCCACGCagcagcgaguuGAUGACG-UUGUUCUcgguguaGUCGg -3'
miRNA:   3'- -CGGUGCG-----------CUACUGCuGGCGAGA-------UAGC- -5'
23865 3' -54 NC_005262.1 + 9968 0.67 0.793583
Target:  5'- cGCCGCGcCGGUGGucagcuCGAugcCCGUgccgCUGUCGa -3'
miRNA:   3'- -CGGUGC-GCUACU------GCU---GGCGa---GAUAGC- -5'
23865 3' -54 NC_005262.1 + 42032 0.68 0.753908
Target:  5'- uGCUugGCGAcguUGACGcguGCCGCUgCgcgAUCu -3'
miRNA:   3'- -CGGugCGCU---ACUGC---UGGCGA-Ga--UAGc -5'
23865 3' -54 NC_005262.1 + 18788 0.68 0.7333
Target:  5'- uGCCGCGUGuUGGCGuccGCCGC-CUGcCGc -3'
miRNA:   3'- -CGGUGCGCuACUGC---UGGCGaGAUaGC- -5'
23865 3' -54 NC_005262.1 + 51471 0.66 0.830638
Target:  5'- cGCCGCGCGcUGcggcACGAgCCGCaugCcGUCGa -3'
miRNA:   3'- -CGGUGCGCuAC----UGCU-GGCGa--GaUAGC- -5'
23865 3' -54 NC_005262.1 + 42444 0.67 0.812479
Target:  5'- cGCUGCGCGcgGccuUGGCCGcCUCgAUCGc -3'
miRNA:   3'- -CGGUGCGCuaCu--GCUGGC-GAGaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.