miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 37586 0.67 0.803118
Target:  5'- aCCA-GCGucaAUGGuuCGACCGCcUCUGUCGa -3'
miRNA:   3'- cGGUgCGC---UACU--GCUGGCG-AGAUAGC- -5'
23865 3' -54 NC_005262.1 + 36147 0.69 0.680243
Target:  5'- cGCCAgCGCGAU--CGACCaGCUCgagcagAUCGu -3'
miRNA:   3'- -CGGU-GCGCUAcuGCUGG-CGAGa-----UAGC- -5'
23865 3' -54 NC_005262.1 + 50278 0.68 0.722843
Target:  5'- cGCC-CGCGccggccgagcccGUGACGGCCGCgcggAUUGa -3'
miRNA:   3'- -CGGuGCGC------------UACUGCUGGCGaga-UAGC- -5'
23865 3' -54 NC_005262.1 + 12522 0.68 0.743659
Target:  5'- uGCCGCGCGAc-GCGAUCGcCUCcaUGUUGc -3'
miRNA:   3'- -CGGUGCGCUacUGCUGGC-GAG--AUAGC- -5'
23865 3' -54 NC_005262.1 + 14207 0.68 0.753908
Target:  5'- uCCACGCGGcacUGACGGCgggCGCgaUGUCGa -3'
miRNA:   3'- cGGUGCGCU---ACUGCUG---GCGagAUAGC- -5'
23865 3' -54 NC_005262.1 + 12949 0.67 0.774031
Target:  5'- gGCgUGCGCGAcGGCaucgccGACCGCUCggcGUCGa -3'
miRNA:   3'- -CG-GUGCGCUaCUG------CUGGCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 44419 0.67 0.783884
Target:  5'- cGCCGCacaCGAUGGCGACCuCg-UGUCGc -3'
miRNA:   3'- -CGGUGc--GCUACUGCUGGcGagAUAGC- -5'
23865 3' -54 NC_005262.1 + 30889 0.67 0.793583
Target:  5'- gGCCGgaUGGUGACG-CCGCUCgcgcUCGa -3'
miRNA:   3'- -CGGUgcGCUACUGCuGGCGAGau--AGC- -5'
23865 3' -54 NC_005262.1 + 28732 0.67 0.793583
Target:  5'- gGCCGCGCGcccggacgccGUGAUGACCGUg------ -3'
miRNA:   3'- -CGGUGCGC----------UACUGCUGGCGagauagc -5'
23865 3' -54 NC_005262.1 + 44710 0.69 0.679166
Target:  5'- cGCCGCGCGcgaggaaAUGcagcuCGGCCGCgaCUAUCu -3'
miRNA:   3'- -CGGUGCGC-------UACu----GCUGGCGa-GAUAGc -5'
23865 3' -54 NC_005262.1 + 51004 0.69 0.669455
Target:  5'- gGCCAaggaaGCGAccGGCGACCGCgccgugAUCGu -3'
miRNA:   3'- -CGGUg----CGCUa-CUGCUGGCGaga---UAGC- -5'
23865 3' -54 NC_005262.1 + 16766 0.7 0.636926
Target:  5'- aGCCAUGCGAUuucGCGAUCGCgaugAUCa -3'
miRNA:   3'- -CGGUGCGCUAc--UGCUGGCGaga-UAGc -5'
23865 3' -54 NC_005262.1 + 38921 0.74 0.420104
Target:  5'- cGUCGCGCaGAUcGAUGG-CGCUCUGUCGu -3'
miRNA:   3'- -CGGUGCG-CUA-CUGCUgGCGAGAUAGC- -5'
23865 3' -54 NC_005262.1 + 17424 0.73 0.458404
Target:  5'- cGCCACGCug-GACGACCugcGCUCguUCGa -3'
miRNA:   3'- -CGGUGCGcuaCUGCUGG---CGAGauAGC- -5'
23865 3' -54 NC_005262.1 + 33877 0.72 0.488316
Target:  5'- cGCCGCGCGcgaGACGAUCGUgc-GUCGg -3'
miRNA:   3'- -CGGUGCGCua-CUGCUGGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 2259 0.71 0.540065
Target:  5'- gGCCGCGuCGAUGACGGcCCGCg------ -3'
miRNA:   3'- -CGGUGC-GCUACUGCU-GGCGagauagc -5'
23865 3' -54 NC_005262.1 + 36035 0.71 0.540065
Target:  5'- uGCCGCGUGGaGACGACCGUaCgccCGg -3'
miRNA:   3'- -CGGUGCGCUaCUGCUGGCGaGauaGC- -5'
23865 3' -54 NC_005262.1 + 25461 0.71 0.571997
Target:  5'- cGCUGCGCGA-GGCGauGCCGCUCg---- -3'
miRNA:   3'- -CGGUGCGCUaCUGC--UGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 1420 0.7 0.604358
Target:  5'- cGCCACGacc--GCGGCCGCUUcGUCGa -3'
miRNA:   3'- -CGGUGCgcuacUGCUGGCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 8204 0.7 0.623889
Target:  5'- cGCCGCaGCGAUGAU--CCGCgcgggccaugagCUGUCGg -3'
miRNA:   3'- -CGGUG-CGCUACUGcuGGCGa-----------GAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.