miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 61279 1.12 0.001136
Target:  5'- cGCCACGCGAUGACGACCGCUCUAUCGg -3'
miRNA:   3'- -CGGUGCGCUACUGCUGGCGAGAUAGC- -5'
23865 3' -54 NC_005262.1 + 50452 0.79 0.206576
Target:  5'- uGCCGCGCGAggagGACGGCCGCaCgguauUCGa -3'
miRNA:   3'- -CGGUGCGCUa---CUGCUGGCGaGau---AGC- -5'
23865 3' -54 NC_005262.1 + 38921 0.74 0.420104
Target:  5'- cGUCGCGCaGAUcGAUGG-CGCUCUGUCGu -3'
miRNA:   3'- -CGGUGCG-CUA-CUGCUgGCGAGAUAGC- -5'
23865 3' -54 NC_005262.1 + 8539 0.73 0.429498
Target:  5'- cGCCgaguGCGUGAUGAUGACCGCaUCcggAUUGu -3'
miRNA:   3'- -CGG----UGCGCUACUGCUGGCG-AGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 17424 0.73 0.458404
Target:  5'- cGCCACGCug-GACGACCugcGCUCguUCGa -3'
miRNA:   3'- -CGGUGCGcuaCUGCUGG---CGAGauAGC- -5'
23865 3' -54 NC_005262.1 + 33877 0.72 0.488316
Target:  5'- cGCCGCGCGcgaGACGAUCGUgc-GUCGg -3'
miRNA:   3'- -CGGUGCGCua-CUGCUGGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 43299 0.72 0.492374
Target:  5'- cGCCGCGcCGAUGguGCGcgcgauuacgcacucGCCGCUCUG-CGg -3'
miRNA:   3'- -CGGUGC-GCUAC--UGC---------------UGGCGAGAUaGC- -5'
23865 3' -54 NC_005262.1 + 38426 0.72 0.508757
Target:  5'- cCUGCGCGAUGAUG-CCGCaccggCUGUUGg -3'
miRNA:   3'- cGGUGCGCUACUGCuGGCGa----GAUAGC- -5'
23865 3' -54 NC_005262.1 + 45846 0.72 0.508757
Target:  5'- uCCgAUGCGAUGACGAUCGCgacCUGcUCGc -3'
miRNA:   3'- cGG-UGCGCUACUGCUGGCGa--GAU-AGC- -5'
23865 3' -54 NC_005262.1 + 2259 0.71 0.540065
Target:  5'- gGCCGCGuCGAUGACGGcCCGCg------ -3'
miRNA:   3'- -CGGUGC-GCUACUGCU-GGCGagauagc -5'
23865 3' -54 NC_005262.1 + 44429 0.71 0.540065
Target:  5'- aGCUACGCGcAUGACGGCuCGUUgUGUg- -3'
miRNA:   3'- -CGGUGCGC-UACUGCUG-GCGAgAUAgc -5'
23865 3' -54 NC_005262.1 + 36035 0.71 0.540065
Target:  5'- uGCCGCGUGGaGACGACCGUaCgccCGg -3'
miRNA:   3'- -CGGUGCGCUaCUGCUGGCGaGauaGC- -5'
23865 3' -54 NC_005262.1 + 13409 0.71 0.5549
Target:  5'- cGCCGCGCGGuucgcgucgccacggUcGACGaaugcGCCGCUCgcgGUCGu -3'
miRNA:   3'- -CGGUGCGCU---------------A-CUGC-----UGGCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 46690 0.71 0.558095
Target:  5'- cGCCGCGCGGUGgaccuccucGCGGCCcgccgcgucgacggGCgcgcCUAUCGg -3'
miRNA:   3'- -CGGUGCGCUAC---------UGCUGG--------------CGa---GAUAGC- -5'
23865 3' -54 NC_005262.1 + 50363 0.71 0.561295
Target:  5'- uUCACGCGGaccauuucggUGACGAuguugugcCCGCUCUcgCGg -3'
miRNA:   3'- cGGUGCGCU----------ACUGCU--------GGCGAGAuaGC- -5'
23865 3' -54 NC_005262.1 + 25461 0.71 0.571997
Target:  5'- cGCUGCGCGA-GGCGauGCCGCUCg---- -3'
miRNA:   3'- -CGGUGCGCUaCUGC--UGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 18730 0.7 0.593537
Target:  5'- cGCgCGCGUGAUGcccuggaauCGGCCGCUCgccggGUUGa -3'
miRNA:   3'- -CG-GUGCGCUACu--------GCUGGCGAGa----UAGC- -5'
23865 3' -54 NC_005262.1 + 1420 0.7 0.604358
Target:  5'- cGCCACGacc--GCGGCCGCUUcGUCGa -3'
miRNA:   3'- -CGGUGCgcuacUGCUGGCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 8204 0.7 0.623889
Target:  5'- cGCCGCaGCGAUGAU--CCGCgcgggccaugagCUGUCGg -3'
miRNA:   3'- -CGGUG-CGCUACUGcuGGCGa-----------GAUAGC- -5'
23865 3' -54 NC_005262.1 + 16766 0.7 0.636926
Target:  5'- aGCCAUGCGAUuucGCGAUCGCgaugAUCa -3'
miRNA:   3'- -CGGUGCGCUAc--UGCUGGCGaga-UAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.