miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 738 0.66 0.830638
Target:  5'- cGCC-CGCGAUGACGuGCCgGCgcaugCUGg-- -3'
miRNA:   3'- -CGGuGCGCUACUGC-UGG-CGa----GAUagc -5'
23865 3' -54 NC_005262.1 + 1202 0.66 0.830638
Target:  5'- cGCCGCGCGAUucuuCGAUCGaUUC-GUCGc -3'
miRNA:   3'- -CGGUGCGCUAcu--GCUGGC-GAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 1420 0.7 0.604358
Target:  5'- cGCCACGacc--GCGGCCGCUUcGUCGa -3'
miRNA:   3'- -CGGUGCgcuacUGCUGGCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 2259 0.71 0.540065
Target:  5'- gGCCGCGuCGAUGACGGcCCGCg------ -3'
miRNA:   3'- -CGGUGC-GCUACUGCU-GGCGagauagc -5'
23865 3' -54 NC_005262.1 + 3844 0.66 0.821655
Target:  5'- cCCGCGCG-UGACGuGCCGCUg----- -3'
miRNA:   3'- cGGUGCGCuACUGC-UGGCGAgauagc -5'
23865 3' -54 NC_005262.1 + 4104 0.66 0.847983
Target:  5'- cGCC-CGCG-UGGCGGCaCGC-CgAUCGu -3'
miRNA:   3'- -CGGuGCGCuACUGCUG-GCGaGaUAGC- -5'
23865 3' -54 NC_005262.1 + 5079 0.66 0.839416
Target:  5'- gGCgGCGCGu--GCGACCgGCUCgg-CGg -3'
miRNA:   3'- -CGgUGCGCuacUGCUGG-CGAGauaGC- -5'
23865 3' -54 NC_005262.1 + 6856 0.68 0.753908
Target:  5'- cCCGCGCGGaucGGCGugCGCUUc-UCGa -3'
miRNA:   3'- cGGUGCGCUa--CUGCugGCGAGauAGC- -5'
23865 3' -54 NC_005262.1 + 8204 0.7 0.623889
Target:  5'- cGCCGCaGCGAUGAU--CCGCgcgggccaugagCUGUCGg -3'
miRNA:   3'- -CGGUG-CGCUACUGcuGGCGa-----------GAUAGC- -5'
23865 3' -54 NC_005262.1 + 8539 0.73 0.429498
Target:  5'- cGCCgaguGCGUGAUGAUGACCGCaUCcggAUUGu -3'
miRNA:   3'- -CGG----UGCGCUACUGCUGGCG-AGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 9968 0.67 0.793583
Target:  5'- cGCCGCGcCGGUGGucagcuCGAugcCCGUgccgCUGUCGa -3'
miRNA:   3'- -CGGUGC-GCUACU------GCU---GGCGa---GAUAGC- -5'
23865 3' -54 NC_005262.1 + 12479 0.67 0.793583
Target:  5'- uGCCGCGCGcgGAUGcGCCcaUCUgGUCGa -3'
miRNA:   3'- -CGGUGCGCuaCUGC-UGGcgAGA-UAGC- -5'
23865 3' -54 NC_005262.1 + 12522 0.68 0.743659
Target:  5'- uGCCGCGCGAc-GCGAUCGcCUCcaUGUUGc -3'
miRNA:   3'- -CGGUGCGCUacUGCUGGC-GAG--AUAGC- -5'
23865 3' -54 NC_005262.1 + 12949 0.67 0.774031
Target:  5'- gGCgUGCGCGAcGGCaucgccGACCGCUCggcGUCGa -3'
miRNA:   3'- -CG-GUGCGCUaCUG------CUGGCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 13409 0.71 0.5549
Target:  5'- cGCCGCGCGGuucgcgucgccacggUcGACGaaugcGCCGCUCgcgGUCGu -3'
miRNA:   3'- -CGGUGCGCU---------------A-CUGC-----UGGCGAGa--UAGC- -5'
23865 3' -54 NC_005262.1 + 14207 0.68 0.753908
Target:  5'- uCCACGCGGcacUGACGGCgggCGCgaUGUCGa -3'
miRNA:   3'- cGGUGCGCU---ACUGCUG---GCGagAUAGC- -5'
23865 3' -54 NC_005262.1 + 14418 0.67 0.783884
Target:  5'- cGCC-CGCGGUGAUGAaCGCgcgcGUCGc -3'
miRNA:   3'- -CGGuGCGCUACUGCUgGCGaga-UAGC- -5'
23865 3' -54 NC_005262.1 + 16766 0.7 0.636926
Target:  5'- aGCCAUGCGAUuucGCGAUCGCgaugAUCa -3'
miRNA:   3'- -CGGUGCGCUAc--UGCUGGCGaga-UAGc -5'
23865 3' -54 NC_005262.1 + 17175 0.66 0.825272
Target:  5'- gGCCGCGCGcgagGacGCGACCGCguucagcaaggccgUUAUCa -3'
miRNA:   3'- -CGGUGCGCua--C--UGCUGGCGa-------------GAUAGc -5'
23865 3' -54 NC_005262.1 + 17424 0.73 0.458404
Target:  5'- cGCCACGCug-GACGACCugcGCUCguUCGa -3'
miRNA:   3'- -CGGUGCGcuaCUGCUGG---CGAGauAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.