miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 61279 1.12 0.001136
Target:  5'- cGCCACGCGAUGACGACCGCUCUAUCGg -3'
miRNA:   3'- -CGGUGCGCUACUGCUGGCGAGAUAGC- -5'
23865 3' -54 NC_005262.1 + 58242 0.68 0.743659
Target:  5'- --uGCGUGGUGACGAuCCGCgc-AUCGa -3'
miRNA:   3'- cggUGCGCUACUGCU-GGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 56501 0.7 0.647786
Target:  5'- cUCGCGCGAgaACGuGCCGCUCgaAUCGg -3'
miRNA:   3'- cGGUGCGCUacUGC-UGGCGAGa-UAGC- -5'
23865 3' -54 NC_005262.1 + 53266 0.66 0.839416
Target:  5'- aCCGCGUGAaaccgGGCGGCaUGCUCguguUCGu -3'
miRNA:   3'- cGGUGCGCUa----CUGCUG-GCGAGau--AGC- -5'
23865 3' -54 NC_005262.1 + 52418 0.68 0.7333
Target:  5'- aGCCGCGCGcgaacguCGugCGCUUcAUCGu -3'
miRNA:   3'- -CGGUGCGCuacu---GCugGCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 51471 0.66 0.830638
Target:  5'- cGCCGCGCGcUGcggcACGAgCCGCaugCcGUCGa -3'
miRNA:   3'- -CGGUGCGCuAC----UGCU-GGCGa--GaUAGC- -5'
23865 3' -54 NC_005262.1 + 51004 0.69 0.669455
Target:  5'- gGCCAaggaaGCGAccGGCGACCGCgccgugAUCGu -3'
miRNA:   3'- -CGGUg----CGCUa-CUGCUGGCGaga---UAGC- -5'
23865 3' -54 NC_005262.1 + 50452 0.79 0.206576
Target:  5'- uGCCGCGCGAggagGACGGCCGCaCgguauUCGa -3'
miRNA:   3'- -CGGUGCGCUa---CUGCUGGCGaGau---AGC- -5'
23865 3' -54 NC_005262.1 + 50363 0.71 0.561295
Target:  5'- uUCACGCGGaccauuucggUGACGAuguugugcCCGCUCUcgCGg -3'
miRNA:   3'- cGGUGCGCU----------ACUGCU--------GGCGAGAuaGC- -5'
23865 3' -54 NC_005262.1 + 50278 0.68 0.722843
Target:  5'- cGCC-CGCGccggccgagcccGUGACGGCCGCgcggAUUGa -3'
miRNA:   3'- -CGGuGCGC------------UACUGCUGGCGaga-UAGC- -5'
23865 3' -54 NC_005262.1 + 46757 0.67 0.812479
Target:  5'- cGCCACGcCGGUcguacaggcGGCGACgCGCggUAUCa -3'
miRNA:   3'- -CGGUGC-GCUA---------CUGCUG-GCGagAUAGc -5'
23865 3' -54 NC_005262.1 + 46690 0.71 0.558095
Target:  5'- cGCCGCGCGGUGgaccuccucGCGGCCcgccgcgucgacggGCgcgcCUAUCGg -3'
miRNA:   3'- -CGGUGCGCUAC---------UGCUGG--------------CGa---GAUAGC- -5'
23865 3' -54 NC_005262.1 + 45846 0.72 0.508757
Target:  5'- uCCgAUGCGAUGACGAUCGCgacCUGcUCGc -3'
miRNA:   3'- cGG-UGCGCUACUGCUGGCGa--GAU-AGC- -5'
23865 3' -54 NC_005262.1 + 44710 0.69 0.679166
Target:  5'- cGCCGCGCGcgaggaaAUGcagcuCGGCCGCgaCUAUCu -3'
miRNA:   3'- -CGGUGCGC-------UACu----GCUGGCGa-GAUAGc -5'
23865 3' -54 NC_005262.1 + 44429 0.71 0.540065
Target:  5'- aGCUACGCGcAUGACGGCuCGUUgUGUg- -3'
miRNA:   3'- -CGGUGCGC-UACUGCUG-GCGAgAUAgc -5'
23865 3' -54 NC_005262.1 + 44419 0.67 0.783884
Target:  5'- cGCCGCacaCGAUGGCGACCuCg-UGUCGc -3'
miRNA:   3'- -CGGUGc--GCUACUGCUGGcGagAUAGC- -5'
23865 3' -54 NC_005262.1 + 43299 0.72 0.492374
Target:  5'- cGCCGCGcCGAUGguGCGcgcgauuacgcacucGCCGCUCUG-CGg -3'
miRNA:   3'- -CGGUGC-GCUAC--UGC---------------UGGCGAGAUaGC- -5'
23865 3' -54 NC_005262.1 + 42976 0.69 0.698475
Target:  5'- cGCCcCGCGAUGuucccugucgauucGCGGCUGCUCg---- -3'
miRNA:   3'- -CGGuGCGCUAC--------------UGCUGGCGAGauagc -5'
23865 3' -54 NC_005262.1 + 42444 0.67 0.812479
Target:  5'- cGCUGCGCGcgGccuUGGCCGcCUCgAUCGc -3'
miRNA:   3'- -CGGUGCGCuaCu--GCUGGC-GAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 42032 0.68 0.753908
Target:  5'- uGCUugGCGAcguUGACGcguGCCGCUgCgcgAUCu -3'
miRNA:   3'- -CGGugCGCU---ACUGC---UGGCGA-Ga--UAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.