miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 47714 0.66 0.393042
Target:  5'- -gCGCCGGGCgGCGGCucGCCGCcUGUAUc -3'
miRNA:   3'- caGCGGUUCG-CGCCG--UGGUGcGCGUA- -5'
23865 5' -61 NC_005262.1 + 45872 0.67 0.384318
Target:  5'- cUCGCCGuuGGCGuCGGCGCCGaucgGCGg-- -3'
miRNA:   3'- cAGCGGU--UCGC-GCCGUGGUg---CGCgua -5'
23865 5' -61 NC_005262.1 + 21117 0.67 0.384318
Target:  5'- --gGCCAcGCGUgcgGGCGCCACGgcuCGCAg -3'
miRNA:   3'- cagCGGUuCGCG---CCGUGGUGC---GCGUa -5'
23865 5' -61 NC_005262.1 + 19816 0.67 0.384318
Target:  5'- aUCGCCc-GCGCG--AUCACGCGCAg -3'
miRNA:   3'- cAGCGGuuCGCGCcgUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 5058 0.67 0.384318
Target:  5'- aUCGgCGGGCaggcccgcgGCGGCGgCGCGUGCGa -3'
miRNA:   3'- cAGCgGUUCG---------CGCCGUgGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 6228 0.67 0.384318
Target:  5'- -cCGCCGAGaUGCugaaGCccGCCGCGCGCAc -3'
miRNA:   3'- caGCGGUUC-GCGc---CG--UGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 34123 0.67 0.384318
Target:  5'- uUCGaCGAGCGC-GCACCGCGCa--- -3'
miRNA:   3'- cAGCgGUUCGCGcCGUGGUGCGcgua -5'
23865 5' -61 NC_005262.1 + 17059 0.67 0.384318
Target:  5'- cUCGUCGcGCGCacGGCGCCgauagGCGCGCc- -3'
miRNA:   3'- cAGCGGUuCGCG--CCGUGG-----UGCGCGua -5'
23865 5' -61 NC_005262.1 + 33929 0.67 0.384318
Target:  5'- -gUGCCGAGCucGCGGCgGgCACGCgGCAa -3'
miRNA:   3'- caGCGGUUCG--CGCCG-UgGUGCG-CGUa -5'
23865 5' -61 NC_005262.1 + 44407 0.67 0.375724
Target:  5'- --aGCCucuGgGCGGCauccauccaGCUACGCGCAUg -3'
miRNA:   3'- cagCGGuu-CgCGCCG---------UGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 53857 0.67 0.375724
Target:  5'- uUCGCCGucAGCGCGcuGCGCUuuGCGCc- -3'
miRNA:   3'- cAGCGGU--UCGCGC--CGUGGugCGCGua -5'
23865 5' -61 NC_005262.1 + 28458 0.67 0.375724
Target:  5'- uGUCGCCGAugauGCGCauGCACUGCGCGa-- -3'
miRNA:   3'- -CAGCGGUU----CGCGc-CGUGGUGCGCgua -5'
23865 5' -61 NC_005262.1 + 47382 0.67 0.374872
Target:  5'- -gCGCCAAGCaCGagggcgaccucgaGCGCgACGCGCAg -3'
miRNA:   3'- caGCGGUUCGcGC-------------CGUGgUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 60053 0.67 0.36726
Target:  5'- aUCGCCugagccGCGCGGaacccauCCAgGCGCAg -3'
miRNA:   3'- cAGCGGuu----CGCGCCgu-----GGUgCGCGUa -5'
23865 5' -61 NC_005262.1 + 17336 0.67 0.36726
Target:  5'- cGUgGCC-GGCGCGGCAUucggguccggCGCGgGCGg -3'
miRNA:   3'- -CAgCGGuUCGCGCCGUG----------GUGCgCGUa -5'
23865 5' -61 NC_005262.1 + 58870 0.67 0.36726
Target:  5'- -aCGCC-GGCGCaGC-CCGCGCGUu- -3'
miRNA:   3'- caGCGGuUCGCGcCGuGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 58716 0.67 0.36726
Target:  5'- -cCGCCGAGC-CGGUcgCACGCGCc- -3'
miRNA:   3'- caGCGGUUCGcGCCGugGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 16333 0.67 0.363911
Target:  5'- aUCGCCGcgauccucuggcucGGCGCgcugaucGGCGCCGC-CGCGUu -3'
miRNA:   3'- cAGCGGU--------------UCGCG-------CCGUGGUGcGCGUA- -5'
23865 5' -61 NC_005262.1 + 51283 0.67 0.358928
Target:  5'- aUCGCgucGCGCGGCAUCugaaGCGCGg -3'
miRNA:   3'- cAGCGguuCGCGCCGUGGug--CGCGUa -5'
23865 5' -61 NC_005262.1 + 10932 0.67 0.358928
Target:  5'- cGUCGUCGAcaucgaGCcGCGCUACGCGCAg -3'
miRNA:   3'- -CAGCGGUUcg----CGcCGUGGUGCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.