miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 49753 0.66 0.419972
Target:  5'- -aCGCCG---GCGGCGCC-CGCGCc- -3'
miRNA:   3'- caGCGGUucgCGCCGUGGuGCGCGua -5'
23865 5' -61 NC_005262.1 + 6338 0.66 0.419972
Target:  5'- -cCGCCGcuuguAGuCGCGGCAgagcucgaaCACGCGCGg -3'
miRNA:   3'- caGCGGU-----UC-GCGCCGUg--------GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 61800 0.66 0.410871
Target:  5'- uUCGCCu-GCGCGGCGCaugccucgGCGCu- -3'
miRNA:   3'- cAGCGGuuCGCGCCGUGgug-----CGCGua -5'
23865 5' -61 NC_005262.1 + 43843 0.66 0.410871
Target:  5'- --gGCCGcGCGCGGCGgUGCGCcgGCAg -3'
miRNA:   3'- cagCGGUuCGCGCCGUgGUGCG--CGUa -5'
23865 5' -61 NC_005262.1 + 41408 0.66 0.410871
Target:  5'- aUCGUC-GGCGcCGGCACCucguAUGCGCc- -3'
miRNA:   3'- cAGCGGuUCGC-GCCGUGG----UGCGCGua -5'
23865 5' -61 NC_005262.1 + 45794 0.66 0.410871
Target:  5'- cUCGUCGGGCcCGGCAgCCACgucgaagaacguGCGCAc -3'
miRNA:   3'- cAGCGGUUCGcGCCGU-GGUG------------CGCGUa -5'
23865 5' -61 NC_005262.1 + 44006 0.66 0.410871
Target:  5'- -cCGCCcgauGUGCGaCgACCACGCGCAc -3'
miRNA:   3'- caGCGGuu--CGCGCcG-UGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 9597 0.66 0.410871
Target:  5'- cUCGCgCGGGCGCuGgAgCACGCGCu- -3'
miRNA:   3'- cAGCG-GUUCGCGcCgUgGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 33172 0.66 0.410871
Target:  5'- cUUGCCGAGCGuCGGCGgCGgcucgaucuuCGCGCc- -3'
miRNA:   3'- cAGCGGUUCGC-GCCGUgGU----------GCGCGua -5'
23865 5' -61 NC_005262.1 + 40561 0.66 0.409968
Target:  5'- -gCGCCGGGCaacaccgGCGGUGCCGCGaccguCGCGc -3'
miRNA:   3'- caGCGGUUCG-------CGCCGUGGUGC-----GCGUa -5'
23865 5' -61 NC_005262.1 + 17249 0.66 0.401894
Target:  5'- cGUCGCgGgagcGGCGgcCGGCGCCGCGCu--- -3'
miRNA:   3'- -CAGCGgU----UCGC--GCCGUGGUGCGcgua -5'
23865 5' -61 NC_005262.1 + 45055 0.66 0.401894
Target:  5'- -cCGgCGAGCgGCcgauuccagGGCAUCACGCGCGc -3'
miRNA:   3'- caGCgGUUCG-CG---------CCGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 14556 0.66 0.401894
Target:  5'- gGUCGCgGAccucgcGCGCGG-ACUGCGCGCc- -3'
miRNA:   3'- -CAGCGgUU------CGCGCCgUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 50410 0.66 0.401894
Target:  5'- cUCGUgGAuGCGCGcGC-CCAgGCGCAg -3'
miRNA:   3'- cAGCGgUU-CGCGC-CGuGGUgCGCGUa -5'
23865 5' -61 NC_005262.1 + 12214 0.66 0.401894
Target:  5'- -aCGCCcugauGgGCGGCGcgcucaagcuCCGCGCGCGa -3'
miRNA:   3'- caGCGGuu---CgCGCCGU----------GGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 37501 0.66 0.401894
Target:  5'- uUCGCaGAGCGCauacGGCACCGuCGCGa-- -3'
miRNA:   3'- cAGCGgUUCGCG----CCGUGGU-GCGCgua -5'
23865 5' -61 NC_005262.1 + 51845 0.66 0.399225
Target:  5'- aUCGCCGucgauccccAGCGCGuGCGCCAUGUucccgacgauggagGCGa -3'
miRNA:   3'- cAGCGGU---------UCGCGC-CGUGGUGCG--------------CGUa -5'
23865 5' -61 NC_005262.1 + 47714 0.66 0.393042
Target:  5'- -gCGCCGGGCgGCGGCucGCCGCcUGUAUc -3'
miRNA:   3'- caGCGGUUCG-CGCCG--UGGUGcGCGUA- -5'
23865 5' -61 NC_005262.1 + 12391 0.66 0.393042
Target:  5'- -cCGCCGAGCacGCGGUGCaCACggucagGCGCGg -3'
miRNA:   3'- caGCGGUUCG--CGCCGUG-GUG------CGCGUa -5'
23865 5' -61 NC_005262.1 + 52304 0.66 0.393042
Target:  5'- --aGCCGAGCucggcgacGCGGC-CCAUGUGCu- -3'
miRNA:   3'- cagCGGUUCG--------CGCCGuGGUGCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.