Results 21 - 40 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23865 | 5' | -61 | NC_005262.1 | + | 11500 | 0.74 | 0.126638 |
Target: 5'- cGUCGCCGAGCuCGGCugCAuCGUGUg- -3' miRNA: 3'- -CAGCGGUUCGcGCCGugGU-GCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 28389 | 0.74 | 0.129759 |
Target: 5'- cGUCGCCGGgcuggagcgugcGCGCGGUauugagcGCCGCGUGCGc -3' miRNA: 3'- -CAGCGGUU------------CGCGCCG-------UGGUGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 22610 | 0.74 | 0.131524 |
Target: 5'- gGUCGCCGGGCgcgcacgcgaucgcgGCGGUGCCcuccuGCGCGCGc -3' miRNA: 3'- -CAGCGGUUCG---------------CGCCGUGG-----UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 53349 | 0.73 | 0.13367 |
Target: 5'- cUCGCCGAccGCGCgaaccugaucGGCGCCAUGCGCc- -3' miRNA: 3'- cAGCGGUU--CGCG----------CCGUGGUGCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 54422 | 0.73 | 0.13732 |
Target: 5'- cUCGCgGAgGCGCaGGcCGCCGCGCGCGc -3' miRNA: 3'- cAGCGgUU-CGCG-CC-GUGGUGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 49215 | 0.73 | 0.13732 |
Target: 5'- --gGCCGAGgGCGGCcucgGCgGCGCGCAg -3' miRNA: 3'- cagCGGUUCgCGCCG----UGgUGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 28145 | 0.73 | 0.140306 |
Target: 5'- cUCGCCAucuuccccgagcGCGCGGCGCaacuGCGCGCGg -3' miRNA: 3'- cAGCGGUu-----------CGCGCCGUGg---UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 47433 | 0.73 | 0.144896 |
Target: 5'- gGUUGCCGAacGCgGCGGCGCCGaucaGCGCGc -3' miRNA: 3'- -CAGCGGUU--CG-CGCCGUGGUg---CGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 51162 | 0.73 | 0.144896 |
Target: 5'- aGUCGCCGAGCGCgcagcaGGCAgCCgACGaCGCGg -3' miRNA: 3'- -CAGCGGUUCGCG------CCGU-GG-UGC-GCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 10781 | 0.73 | 0.148825 |
Target: 5'- -gCGCCGGgcGCGCGGUACUGCuGCGCGa -3' miRNA: 3'- caGCGGUU--CGCGCCGUGGUG-CGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 23306 | 0.73 | 0.148825 |
Target: 5'- uUCGCCAucaAGCGCaucaaGGCGCCGCGCacgaGCAc -3' miRNA: 3'- cAGCGGU---UCGCG-----CCGUGGUGCG----CGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 35633 | 0.73 | 0.152851 |
Target: 5'- -cCGCCGcGCGCaguuGCGCCGCGCGCu- -3' miRNA: 3'- caGCGGUuCGCGc---CGUGGUGCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 21928 | 0.72 | 0.156976 |
Target: 5'- aUCGCauuauacGGUGCGGCACCACaCGCAg -3' miRNA: 3'- cAGCGgu-----UCGCGCCGUGGUGcGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 36726 | 0.72 | 0.156976 |
Target: 5'- uGUCGCCGAGCuCGcGCACgaACGCGUAg -3' miRNA: 3'- -CAGCGGUUCGcGC-CGUGg-UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 44610 | 0.72 | 0.1612 |
Target: 5'- -cCGCuCGAGCGCGagaaGC-CCGCGCGCAa -3' miRNA: 3'- caGCG-GUUCGCGC----CGuGGUGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 4907 | 0.72 | 0.169959 |
Target: 5'- aUCGCgcAGCGCGGCagcaGCCaACGCGCGg -3' miRNA: 3'- cAGCGguUCGCGCCG----UGG-UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 13459 | 0.72 | 0.169959 |
Target: 5'- gGUCGCaagGGCGCGaaGC-CCGCGCGCGUc -3' miRNA: 3'- -CAGCGgu-UCGCGC--CGuGGUGCGCGUA- -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 51851 | 0.72 | 0.169959 |
Target: 5'- -gUGCUgAAGCGCGGCGCCGCGaacgaCGCGa -3' miRNA: 3'- caGCGG-UUCGCGCCGUGGUGC-----GCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 2653 | 0.72 | 0.169959 |
Target: 5'- -aUGCCu-GCGCGGCGCCGgGCGgCGUc -3' miRNA: 3'- caGCGGuuCGCGCCGUGGUgCGC-GUA- -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 21542 | 0.72 | 0.174496 |
Target: 5'- cGUCGCCGcagugAGCGCGGCGCU-CG-GCAUc -3' miRNA: 3'- -CAGCGGU-----UCGCGCCGUGGuGCgCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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