miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 61316 1.05 0.000517
Target:  5'- gGUCGCCAAGCGCGGCACCACGCGCAUg -3'
miRNA:   3'- -CAGCGGUUCGCGCCGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 17470 0.79 0.053618
Target:  5'- uUCGCCGAGUuccaggacgaaGCGcGCGCCGCGCGCGa -3'
miRNA:   3'- cAGCGGUUCG-----------CGC-CGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 23388 0.78 0.061721
Target:  5'- gGUCGCCGAcGCGCGGCugaauCCGCGCGa-- -3'
miRNA:   3'- -CAGCGGUU-CGCGCCGu----GGUGCGCgua -5'
23865 5' -61 NC_005262.1 + 59234 0.77 0.069044
Target:  5'- -cCGCCGcuGGCGCGagauGCGCCGCGCGCGc -3'
miRNA:   3'- caGCGGU--UCGCGC----CGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 18120 0.77 0.069044
Target:  5'- -gCGCacgAAGUGCGGCACCAUGCGCu- -3'
miRNA:   3'- caGCGg--UUCGCGCCGUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 48095 0.77 0.071001
Target:  5'- -gCGCCGAcGCGCGaugaugugacGCGCCGCGCGCAa -3'
miRNA:   3'- caGCGGUU-CGCGC----------CGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 14440 0.77 0.075078
Target:  5'- cGUCGCCGAGUcgucaGCGaGCGCgGCGCGCGc -3'
miRNA:   3'- -CAGCGGUUCG-----CGC-CGUGgUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 25362 0.77 0.075078
Target:  5'- -aCGCCAacagccGGUGCGGCAUCAuCGCGCAg -3'
miRNA:   3'- caGCGGU------UCGCGCCGUGGU-GCGCGUa -5'
23865 5' -61 NC_005262.1 + 29032 0.77 0.077199
Target:  5'- -cCGCCGAGCucgaGCGGCGCCggcacgACGCGCAc -3'
miRNA:   3'- caGCGGUUCG----CGCCGUGG------UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 20834 0.77 0.079378
Target:  5'- aUCGCgGGGCGCGGCACCcgcucuacACGaCGCAg -3'
miRNA:   3'- cAGCGgUUCGCGCCGUGG--------UGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 32898 0.76 0.093735
Target:  5'- cGUCgGCCAAGCcgGCGGCGuCgCACGCGCGa -3'
miRNA:   3'- -CAG-CGGUUCG--CGCCGU-G-GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 59140 0.75 0.096356
Target:  5'- --gGCCGGGcCGCGuCGCCGCGCGCAUg -3'
miRNA:   3'- cagCGGUUC-GCGCcGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 19014 0.75 0.10464
Target:  5'- cUCGUCGAGCuCGGCcuGCCGCGCGCu- -3'
miRNA:   3'- cAGCGGUUCGcGCCG--UGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 50419 0.75 0.10464
Target:  5'- -cCGCgGAGCGCGaGgGCCGCGUGCAc -3'
miRNA:   3'- caGCGgUUCGCGC-CgUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 15340 0.75 0.10464
Target:  5'- cUCGCgAuccGCGCGGCAUaCGCGCGCGUg -3'
miRNA:   3'- cAGCGgUu--CGCGCCGUG-GUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 16096 0.74 0.11359
Target:  5'- -cCGCCcGGCGCGGUGCUugGCGuCAg -3'
miRNA:   3'- caGCGGuUCGCGCCGUGGugCGC-GUa -5'
23865 5' -61 NC_005262.1 + 62101 0.74 0.116729
Target:  5'- cGUCGCCGc-CGCGGCaACCGCGuCGCGg -3'
miRNA:   3'- -CAGCGGUucGCGCCG-UGGUGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 14559 0.74 0.119949
Target:  5'- aUCGgCAGGCgucucgccGCGGCGCuCACGCGCAc -3'
miRNA:   3'- cAGCgGUUCG--------CGCCGUG-GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 43052 0.74 0.123251
Target:  5'- aUCGaCCcGGC-CGGCACCGCGCGCc- -3'
miRNA:   3'- cAGC-GGuUCGcGCCGUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 52211 0.74 0.126638
Target:  5'- aGUCGCuCGAGCGCuGGcCGCCgccggcauagcaGCGCGCGUg -3'
miRNA:   3'- -CAGCG-GUUCGCG-CC-GUGG------------UGCGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.