miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 40561 0.66 0.409968
Target:  5'- -gCGCCGGGCaacaccgGCGGUGCCGCGaccguCGCGc -3'
miRNA:   3'- caGCGGUUCG-------CGCCGUGGUGC-----GCGUa -5'
23865 5' -61 NC_005262.1 + 45055 0.66 0.401894
Target:  5'- -cCGgCGAGCgGCcgauuccagGGCAUCACGCGCGc -3'
miRNA:   3'- caGCgGUUCG-CG---------CCGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 26278 0.66 0.438533
Target:  5'- -cCGCaCGA-CGCGG-ACCACGUGCGUc -3'
miRNA:   3'- caGCG-GUUcGCGCCgUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 18714 0.66 0.438533
Target:  5'- -cCGCCAGGCGUcaaGGCGCUccucagcuucgGCGCGg-- -3'
miRNA:   3'- caGCGGUUCGCG---CCGUGG-----------UGCGCgua -5'
23865 5' -61 NC_005262.1 + 28291 0.66 0.419972
Target:  5'- uGUCGCCuauGCGC-GCAagCGCGUGCGc -3'
miRNA:   3'- -CAGCGGuu-CGCGcCGUg-GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 29785 0.66 0.419972
Target:  5'- -gUGCCGgacGGCGCGGCACCcca-GCAa -3'
miRNA:   3'- caGCGGU---UCGCGCCGUGGugcgCGUa -5'
23865 5' -61 NC_005262.1 + 47714 0.66 0.393042
Target:  5'- -gCGCCGGGCgGCGGCucGCCGCcUGUAUc -3'
miRNA:   3'- caGCGGUUCG-CGCCG--UGGUGcGCGUA- -5'
23865 5' -61 NC_005262.1 + 40239 0.66 0.429193
Target:  5'- aGUCGU---GCGCGuG-ACCGCGCGCAg -3'
miRNA:   3'- -CAGCGguuCGCGC-CgUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 44774 0.66 0.429193
Target:  5'- aUCGCCAGcGCGCGGCagGCCGaGCuCGa -3'
miRNA:   3'- cAGCGGUU-CGCGCCG--UGGUgCGcGUa -5'
23865 5' -61 NC_005262.1 + 43843 0.66 0.410871
Target:  5'- --gGCCGcGCGCGGCGgUGCGCcgGCAg -3'
miRNA:   3'- cagCGGUuCGCGCCGUgGUGCG--CGUa -5'
23865 5' -61 NC_005262.1 + 4574 0.66 0.429193
Target:  5'- -gCGCC-AGCgGCGGCGCUgcuCGgGCGUg -3'
miRNA:   3'- caGCGGuUCG-CGCCGUGGu--GCgCGUA- -5'
23865 5' -61 NC_005262.1 + 6338 0.66 0.419972
Target:  5'- -cCGCCGcuuguAGuCGCGGCAgagcucgaaCACGCGCGg -3'
miRNA:   3'- caGCGGU-----UC-GCGCCGUg--------GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 41408 0.66 0.410871
Target:  5'- aUCGUC-GGCGcCGGCACCucguAUGCGCc- -3'
miRNA:   3'- cAGCGGuUCGC-GCCGUGG----UGCGCGua -5'
23865 5' -61 NC_005262.1 + 24198 0.66 0.429193
Target:  5'- -aCGcCCGAG-GCGGCAgCCGCGaCGCu- -3'
miRNA:   3'- caGC-GGUUCgCGCCGU-GGUGC-GCGua -5'
23865 5' -61 NC_005262.1 + 61800 0.66 0.410871
Target:  5'- uUCGCCu-GCGCGGCGCaugccucgGCGCu- -3'
miRNA:   3'- cAGCGGuuCGCGCCGUGgug-----CGCGua -5'
23865 5' -61 NC_005262.1 + 44969 0.66 0.438533
Target:  5'- -cCGCCGAG-GCGaGgGCCgACGUGCAg -3'
miRNA:   3'- caGCGGUUCgCGC-CgUGG-UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 45459 0.66 0.419972
Target:  5'- aUCGCC-GGCGCgGGCAUCAUG-GCu- -3'
miRNA:   3'- cAGCGGuUCGCG-CCGUGGUGCgCGua -5'
23865 5' -61 NC_005262.1 + 49753 0.66 0.419972
Target:  5'- -aCGCCG---GCGGCGCC-CGCGCc- -3'
miRNA:   3'- caGCGGUucgCGCCGUGGuGCGCGua -5'
23865 5' -61 NC_005262.1 + 37501 0.66 0.401894
Target:  5'- uUCGCaGAGCGCauacGGCACCGuCGCGa-- -3'
miRNA:   3'- cAGCGgUUCGCG----CCGUGGU-GCGCgua -5'
23865 5' -61 NC_005262.1 + 30279 0.66 0.438533
Target:  5'- --gGCCGAGCG-GGCAaucgaGCGCGCu- -3'
miRNA:   3'- cagCGGUUCGCgCCGUgg---UGCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.