Results 21 - 40 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23865 | 5' | -61 | NC_005262.1 | + | 9597 | 0.66 | 0.410871 |
Target: 5'- cUCGCgCGGGCGCuGgAgCACGCGCu- -3' miRNA: 3'- cAGCG-GUUCGCGcCgUgGUGCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 30279 | 0.66 | 0.438533 |
Target: 5'- --gGCCGAGCG-GGCAaucgaGCGCGCu- -3' miRNA: 3'- cagCGGUUCGCgCCGUgg---UGCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 44969 | 0.66 | 0.438533 |
Target: 5'- -cCGCCGAG-GCGaGgGCCgACGUGCAg -3' miRNA: 3'- caGCGGUUCgCGC-CgUGG-UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 43843 | 0.66 | 0.410871 |
Target: 5'- --gGCCGcGCGCGGCGgUGCGCcgGCAg -3' miRNA: 3'- cagCGGUuCGCGCCGUgGUGCG--CGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 4574 | 0.66 | 0.429193 |
Target: 5'- -gCGCC-AGCgGCGGCGCUgcuCGgGCGUg -3' miRNA: 3'- caGCGGuUCG-CGCCGUGGu--GCgCGUA- -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 24198 | 0.66 | 0.429193 |
Target: 5'- -aCGcCCGAG-GCGGCAgCCGCGaCGCu- -3' miRNA: 3'- caGC-GGUUCgCGCCGU-GGUGC-GCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 45459 | 0.66 | 0.419972 |
Target: 5'- aUCGCC-GGCGCgGGCAUCAUG-GCu- -3' miRNA: 3'- cAGCGGuUCGCG-CCGUGGUGCgCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 61800 | 0.66 | 0.410871 |
Target: 5'- uUCGCCu-GCGCGGCGCaugccucgGCGCu- -3' miRNA: 3'- cAGCGGuuCGCGCCGUGgug-----CGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 49753 | 0.66 | 0.419972 |
Target: 5'- -aCGCCG---GCGGCGCC-CGCGCc- -3' miRNA: 3'- caGCGGUucgCGCCGUGGuGCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 44774 | 0.66 | 0.429193 |
Target: 5'- aUCGCCAGcGCGCGGCagGCCGaGCuCGa -3' miRNA: 3'- cAGCGGUU-CGCGCCG--UGGUgCGcGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 26278 | 0.66 | 0.438533 |
Target: 5'- -cCGCaCGA-CGCGG-ACCACGUGCGUc -3' miRNA: 3'- caGCG-GUUcGCGCCgUGGUGCGCGUA- -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 8150 | 0.66 | 0.438533 |
Target: 5'- -gUGCCGGaCGCGGcCACgaGCGCGCGg -3' miRNA: 3'- caGCGGUUcGCGCC-GUGg-UGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 45794 | 0.66 | 0.410871 |
Target: 5'- cUCGUCGGGCcCGGCAgCCACgucgaagaacguGCGCAc -3' miRNA: 3'- cAGCGGUUCGcGCCGU-GGUG------------CGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 42249 | 0.66 | 0.438533 |
Target: 5'- -aUGCCGAGCGCcGCGCuCACuGCgGCGa -3' miRNA: 3'- caGCGGUUCGCGcCGUG-GUG-CG-CGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 40239 | 0.66 | 0.429193 |
Target: 5'- aGUCGU---GCGCGuG-ACCGCGCGCAg -3' miRNA: 3'- -CAGCGguuCGCGC-CgUGGUGCGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 18714 | 0.66 | 0.438533 |
Target: 5'- -cCGCCAGGCGUcaaGGCGCUccucagcuucgGCGCGg-- -3' miRNA: 3'- caGCGGUUCGCG---CCGUGG-----------UGCGCgua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 33172 | 0.66 | 0.410871 |
Target: 5'- cUUGCCGAGCGuCGGCGgCGgcucgaucuuCGCGCc- -3' miRNA: 3'- cAGCGGUUCGC-GCCGUgGU----------GCGCGua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 17249 | 0.66 | 0.401894 |
Target: 5'- cGUCGCgGgagcGGCGgcCGGCGCCGCGCu--- -3' miRNA: 3'- -CAGCGgU----UCGC--GCCGUGGUGCGcgua -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 12391 | 0.66 | 0.393042 |
Target: 5'- -cCGCCGAGCacGCGGUGCaCACggucagGCGCGg -3' miRNA: 3'- caGCGGUUCG--CGCCGUG-GUG------CGCGUa -5' |
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23865 | 5' | -61 | NC_005262.1 | + | 40561 | 0.66 | 0.409968 |
Target: 5'- -gCGCCGGGCaacaccgGCGGUGCCGCGaccguCGCGc -3' miRNA: 3'- caGCGGUUCG-------CGCCGUGGUGC-----GCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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