miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 10997 0.68 0.309524
Target:  5'- gGUCGCgcucgcacggcugaCGAGCgagGCGGCugucgcgcaagACCGCGCGCAg -3'
miRNA:   3'- -CAGCG--------------GUUCG---CGCCG-----------UGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 11429 0.68 0.326167
Target:  5'- -cCGCCGAagguGCGCGacacgccGCGCC-CGCGCAUc -3'
miRNA:   3'- caGCGGUU----CGCGC-------CGUGGuGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 11500 0.74 0.126638
Target:  5'- cGUCGCCGAGCuCGGCugCAuCGUGUg- -3'
miRNA:   3'- -CAGCGGUUCGcGCCGugGU-GCGCGua -5'
23865 5' -61 NC_005262.1 + 11942 0.7 0.25008
Target:  5'- -gCGUCGuuCGCGGCGCCGCGCuucaGCAc -3'
miRNA:   3'- caGCGGUucGCGCCGUGGUGCG----CGUa -5'
23865 5' -61 NC_005262.1 + 11996 0.69 0.27413
Target:  5'- cGUCGCCGAG-GCGGUacgugacagccuggACC-UGCGCAUc -3'
miRNA:   3'- -CAGCGGUUCgCGCCG--------------UGGuGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 12214 0.66 0.401894
Target:  5'- -aCGCCcugauGgGCGGCGcgcucaagcuCCGCGCGCGa -3'
miRNA:   3'- caGCGGuu---CgCGCCGU----------GGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 12391 0.66 0.393042
Target:  5'- -cCGCCGAGCacGCGGUGCaCACggucagGCGCGg -3'
miRNA:   3'- caGCGGUUCG--CGCCGUG-GUG------CGCGUa -5'
23865 5' -61 NC_005262.1 + 12435 0.71 0.204038
Target:  5'- cGUCGCgGacGGCGCGGUGCCGaGCuGCAUg -3'
miRNA:   3'- -CAGCGgU--UCGCGCCGUGGUgCG-CGUA- -5'
23865 5' -61 NC_005262.1 + 12468 0.72 0.17914
Target:  5'- cGUCGCUca-CGgGGCGCCGCGCgGCAUa -3'
miRNA:   3'- -CAGCGGuucGCgCCGUGGUGCG-CGUA- -5'
23865 5' -61 NC_005262.1 + 12597 0.68 0.326939
Target:  5'- aUCGCCc-GCGCGGCuccagcggGCCGC-CGCGUc -3'
miRNA:   3'- cAGCGGuuCGCGCCG--------UGGUGcGCGUA- -5'
23865 5' -61 NC_005262.1 + 12625 0.68 0.303635
Target:  5'- cUCGCCGcauuGCuCGGCACCgugaagaagaagcGCGCGCGg -3'
miRNA:   3'- cAGCGGUu---CGcGCCGUGG-------------UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 12925 0.68 0.297113
Target:  5'- -gCGCCGugcgauuGCGuCGGCACCugcggcauuucuGCGCGCGg -3'
miRNA:   3'- caGCGGUu------CGC-GCCGUGG------------UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 13459 0.72 0.169959
Target:  5'- gGUCGCaagGGCGCGaaGC-CCGCGCGCGUc -3'
miRNA:   3'- -CAGCGgu-UCGCGC--CGuGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 14326 0.67 0.348296
Target:  5'- -cCGCCGAGCuggGCGGCGaaguugcgacgugcUUGCGCGCGUc -3'
miRNA:   3'- caGCGGUUCG---CGCCGU--------------GGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 14440 0.77 0.075078
Target:  5'- cGUCGCCGAGUcgucaGCGaGCGCgGCGCGCGc -3'
miRNA:   3'- -CAGCGGUUCG-----CGC-CGUGgUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 14556 0.66 0.401894
Target:  5'- gGUCGCgGAccucgcGCGCGG-ACUGCGCGCc- -3'
miRNA:   3'- -CAGCGgUU------CGCGCCgUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 14559 0.74 0.119949
Target:  5'- aUCGgCAGGCgucucgccGCGGCGCuCACGCGCAc -3'
miRNA:   3'- cAGCgGUUCG--------CGCCGUG-GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 15340 0.75 0.10464
Target:  5'- cUCGCgAuccGCGCGGCAUaCGCGCGCGUg -3'
miRNA:   3'- cAGCGgUu--CGCGCCGUG-GUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 15679 0.67 0.349917
Target:  5'- -aCGCCGAgcucuugcGCGCGGCGCgucacauCAuCGCGCGUc -3'
miRNA:   3'- caGCGGUU--------CGCGCCGUG-------GU-GCGCGUA- -5'
23865 5' -61 NC_005262.1 + 15692 0.71 0.183894
Target:  5'- cGUCGCCGAGacggacgaGCaGCGCUAUGCGCu- -3'
miRNA:   3'- -CAGCGGUUCg-------CGcCGUGGUGCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.