miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 2653 0.72 0.169959
Target:  5'- -aUGCCu-GCGCGGCGCCGgGCGgCGUc -3'
miRNA:   3'- caGCGGuuCGCGCCGUGGUgCGC-GUA- -5'
23865 5' -61 NC_005262.1 + 3238 0.69 0.276159
Target:  5'- -gCGCCGAGCGcCGGCGUCAgCGUGCc- -3'
miRNA:   3'- caGCGGUUCGC-GCCGUGGU-GCGCGua -5'
23865 5' -61 NC_005262.1 + 4574 0.66 0.429193
Target:  5'- -gCGCC-AGCgGCGGCGCUgcuCGgGCGUg -3'
miRNA:   3'- caGCGGuUCG-CGCCGUGGu--GCgCGUA- -5'
23865 5' -61 NC_005262.1 + 4907 0.72 0.169959
Target:  5'- aUCGCgcAGCGCGGCagcaGCCaACGCGCGg -3'
miRNA:   3'- cAGCGguUCGCGCCG----UGG-UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 5058 0.67 0.384318
Target:  5'- aUCGgCGGGCaggcccgcgGCGGCGgCGCGUGCGa -3'
miRNA:   3'- cAGCgGUUCG---------CGCCGUgGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 5184 0.68 0.31928
Target:  5'- cGUCG-CGGGCGCgGGCGCgGCcgGCGCGa -3'
miRNA:   3'- -CAGCgGUUCGCG-CCGUGgUG--CGCGUa -5'
23865 5' -61 NC_005262.1 + 6228 0.67 0.384318
Target:  5'- -cCGCCGAGaUGCugaaGCccGCCGCGCGCAc -3'
miRNA:   3'- caGCGGUUC-GCGc---CG--UGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 6338 0.66 0.419972
Target:  5'- -cCGCCGcuuguAGuCGCGGCAgagcucgaaCACGCGCGg -3'
miRNA:   3'- caGCGGU-----UC-GCGCCGUg--------GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 6348 0.69 0.289994
Target:  5'- cGUCGCCGc-CGCGGCAUC-CGCGgAc -3'
miRNA:   3'- -CAGCGGUucGCGCCGUGGuGCGCgUa -5'
23865 5' -61 NC_005262.1 + 7045 0.67 0.358928
Target:  5'- cGUCGCCcgacgccAGCGCGGCgGCCAUGuCGa-- -3'
miRNA:   3'- -CAGCGGu------UCGCGCCG-UGGUGC-GCgua -5'
23865 5' -61 NC_005262.1 + 7286 0.69 0.28301
Target:  5'- uGUCGCCGAuucgaGCGGCACguucuCGCGCGa -3'
miRNA:   3'- -CAGCGGUUcg---CGCCGUGgu---GCGCGUa -5'
23865 5' -61 NC_005262.1 + 8150 0.66 0.438533
Target:  5'- -gUGCCGGaCGCGGcCACgaGCGCGCGg -3'
miRNA:   3'- caGCGGUUcGCGCC-GUGg-UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 8455 0.72 0.17914
Target:  5'- cUCGUCGAGCGCGGCuuuCCACuCGUc- -3'
miRNA:   3'- cAGCGGUUCGCGCCGu--GGUGcGCGua -5'
23865 5' -61 NC_005262.1 + 8569 0.68 0.297113
Target:  5'- aUUGUUGAGCGCGGC-CUGCGCGaCGa -3'
miRNA:   3'- cAGCGGUUCGCGCCGuGGUGCGC-GUa -5'
23865 5' -61 NC_005262.1 + 9365 0.66 0.429193
Target:  5'- gGUCGgCGcGCGCGGCGgCC-UGCGCc- -3'
miRNA:   3'- -CAGCgGUuCGCGCCGU-GGuGCGCGua -5'
23865 5' -61 NC_005262.1 + 9597 0.66 0.410871
Target:  5'- cUCGCgCGGGCGCuGgAgCACGCGCu- -3'
miRNA:   3'- cAGCG-GUUCGCGcCgUgGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 9825 0.68 0.303635
Target:  5'- aUCGCCGAGCGUcuuGaGCGacuguucCCACGCGCc- -3'
miRNA:   3'- cAGCGGUUCGCG---C-CGU-------GGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 10429 0.67 0.350729
Target:  5'- -gCGgCAGGCGCauGGCGCCGaucagguuCGCGCGg -3'
miRNA:   3'- caGCgGUUCGCG--CCGUGGU--------GCGCGUa -5'
23865 5' -61 NC_005262.1 + 10781 0.73 0.148825
Target:  5'- -gCGCCGGgcGCGCGGUACUGCuGCGCGa -3'
miRNA:   3'- caGCGGUU--CGCGCCGUGGUG-CGCGUa -5'
23865 5' -61 NC_005262.1 + 10932 0.67 0.358928
Target:  5'- cGUCGUCGAcaucgaGCcGCGCUACGCGCAg -3'
miRNA:   3'- -CAGCGGUUcg----CGcCGUGGUGCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.