miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 13459 0.72 0.169959
Target:  5'- gGUCGCaagGGCGCGaaGC-CCGCGCGCGUc -3'
miRNA:   3'- -CAGCGgu-UCGCGC--CGuGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 49215 0.73 0.13732
Target:  5'- --gGCCGAGgGCGGCcucgGCgGCGCGCAg -3'
miRNA:   3'- cagCGGUUCgCGCCG----UGgUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 54422 0.73 0.13732
Target:  5'- cUCGCgGAgGCGCaGGcCGCCGCGCGCGc -3'
miRNA:   3'- cAGCGgUU-CGCG-CC-GUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 28145 0.73 0.140306
Target:  5'- cUCGCCAucuuccccgagcGCGCGGCGCaacuGCGCGCGg -3'
miRNA:   3'- cAGCGGUu-----------CGCGCCGUGg---UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 51162 0.73 0.144896
Target:  5'- aGUCGCCGAGCGCgcagcaGGCAgCCgACGaCGCGg -3'
miRNA:   3'- -CAGCGGUUCGCG------CCGU-GG-UGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 10781 0.73 0.148825
Target:  5'- -gCGCCGGgcGCGCGGUACUGCuGCGCGa -3'
miRNA:   3'- caGCGGUU--CGCGCCGUGGUG-CGCGUa -5'
23865 5' -61 NC_005262.1 + 23306 0.73 0.148825
Target:  5'- uUCGCCAucaAGCGCaucaaGGCGCCGCGCacgaGCAc -3'
miRNA:   3'- cAGCGGU---UCGCG-----CCGUGGUGCG----CGUa -5'
23865 5' -61 NC_005262.1 + 44610 0.72 0.1612
Target:  5'- -cCGCuCGAGCGCGagaaGC-CCGCGCGCAa -3'
miRNA:   3'- caGCG-GUUCGCGC----CGuGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 51851 0.72 0.169959
Target:  5'- -gUGCUgAAGCGCGGCGCCGCGaacgaCGCGa -3'
miRNA:   3'- caGCGG-UUCGCGCCGUGGUGC-----GCGUa -5'
23865 5' -61 NC_005262.1 + 53349 0.73 0.13367
Target:  5'- cUCGCCGAccGCGCgaaccugaucGGCGCCAUGCGCc- -3'
miRNA:   3'- cAGCGGUU--CGCG----------CCGUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 11500 0.74 0.126638
Target:  5'- cGUCGCCGAGCuCGGCugCAuCGUGUg- -3'
miRNA:   3'- -CAGCGGUUCGcGCCGugGU-GCGCGua -5'
23865 5' -61 NC_005262.1 + 43052 0.74 0.123251
Target:  5'- aUCGaCCcGGC-CGGCACCGCGCGCc- -3'
miRNA:   3'- cAGC-GGuUCGcGCCGUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 48095 0.77 0.071001
Target:  5'- -gCGCCGAcGCGCGaugaugugacGCGCCGCGCGCAa -3'
miRNA:   3'- caGCGGUU-CGCGC----------CGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 25362 0.77 0.075078
Target:  5'- -aCGCCAacagccGGUGCGGCAUCAuCGCGCAg -3'
miRNA:   3'- caGCGGU------UCGCGCCGUGGU-GCGCGUa -5'
23865 5' -61 NC_005262.1 + 20834 0.77 0.079378
Target:  5'- aUCGCgGGGCGCGGCACCcgcucuacACGaCGCAg -3'
miRNA:   3'- cAGCGgUUCGCGCCGUGG--------UGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 32898 0.76 0.093735
Target:  5'- cGUCgGCCAAGCcgGCGGCGuCgCACGCGCGa -3'
miRNA:   3'- -CAG-CGGUUCG--CGCCGU-G-GUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 59140 0.75 0.096356
Target:  5'- --gGCCGGGcCGCGuCGCCGCGCGCAUg -3'
miRNA:   3'- cagCGGUUC-GCGCcGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 50419 0.75 0.10464
Target:  5'- -cCGCgGAGCGCGaGgGCCGCGUGCAc -3'
miRNA:   3'- caGCGgUUCGCGC-CgUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 62101 0.74 0.116729
Target:  5'- cGUCGCCGc-CGCGGCaACCGCGuCGCGg -3'
miRNA:   3'- -CAGCGGUucGCGCCG-UGGUGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 14559 0.74 0.119949
Target:  5'- aUCGgCAGGCgucucgccGCGGCGCuCACGCGCAc -3'
miRNA:   3'- cAGCgGUUCG--------CGCCGUG-GUGCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.