miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 8150 0.66 0.438533
Target:  5'- -gUGCCGGaCGCGGcCACgaGCGCGCGg -3'
miRNA:   3'- caGCGGUUcGCGCC-GUGg-UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 12391 0.66 0.393042
Target:  5'- -cCGCCGAGCacGCGGUGCaCACggucagGCGCGg -3'
miRNA:   3'- caGCGGUUCG--CGCCGUG-GUG------CGCGUa -5'
23865 5' -61 NC_005262.1 + 29208 0.66 0.393042
Target:  5'- cUCGUgGaucacGGCGCcGCACgGCGCGCAc -3'
miRNA:   3'- cAGCGgU-----UCGCGcCGUGgUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 61316 1.05 0.000517
Target:  5'- gGUCGCCAAGCGCGGCACCACGCGCAUg -3'
miRNA:   3'- -CAGCGGUUCGCGCCGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 58656 0.66 0.428266
Target:  5'- -gCGCCGAGCaggaucaGCGcCGCCcguCGCGCAUg -3'
miRNA:   3'- caGCGGUUCG-------CGCcGUGGu--GCGCGUA- -5'
23865 5' -61 NC_005262.1 + 42442 0.66 0.419972
Target:  5'- cUCGCUgcGCGCGGC-CUugGcCGCc- -3'
miRNA:   3'- cAGCGGuuCGCGCCGuGGugC-GCGua -5'
23865 5' -61 NC_005262.1 + 35766 0.66 0.419972
Target:  5'- -gCGCC-AGCucuCGGCGCC-CGCGUAg -3'
miRNA:   3'- caGCGGuUCGc--GCCGUGGuGCGCGUa -5'
23865 5' -61 NC_005262.1 + 33172 0.66 0.410871
Target:  5'- cUUGCCGAGCGuCGGCGgCGgcucgaucuuCGCGCc- -3'
miRNA:   3'- cAGCGGUUCGC-GCCGUgGU----------GCGCGua -5'
23865 5' -61 NC_005262.1 + 45794 0.66 0.410871
Target:  5'- cUCGUCGGGCcCGGCAgCCACgucgaagaacguGCGCAc -3'
miRNA:   3'- cAGCGGUUCGcGCCGU-GGUG------------CGCGUa -5'
23865 5' -61 NC_005262.1 + 51845 0.66 0.399225
Target:  5'- aUCGCCGucgauccccAGCGCGuGCGCCAUGUucccgacgauggagGCGa -3'
miRNA:   3'- cAGCGGU---------UCGCGC-CGUGGUGCG--------------CGUa -5'
23865 5' -61 NC_005262.1 + 12214 0.66 0.401894
Target:  5'- -aCGCCcugauGgGCGGCGcgcucaagcuCCGCGCGCGa -3'
miRNA:   3'- caGCGGuu---CgCGCCGU----------GGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 9597 0.66 0.410871
Target:  5'- cUCGCgCGGGCGCuGgAgCACGCGCu- -3'
miRNA:   3'- cAGCG-GUUCGCGcCgUgGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 9365 0.66 0.429193
Target:  5'- gGUCGgCGcGCGCGGCGgCC-UGCGCc- -3'
miRNA:   3'- -CAGCgGUuCGCGCCGU-GGuGCGCGua -5'
23865 5' -61 NC_005262.1 + 50410 0.66 0.401894
Target:  5'- cUCGUgGAuGCGCGcGC-CCAgGCGCAg -3'
miRNA:   3'- cAGCGgUU-CGCGC-CGuGGUgCGCGUa -5'
23865 5' -61 NC_005262.1 + 63689 0.66 0.429193
Target:  5'- gGUCGCC-GGC-CGGUGaCAUGCGCAg -3'
miRNA:   3'- -CAGCGGuUCGcGCCGUgGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 44006 0.66 0.410871
Target:  5'- -cCGCCcgauGUGCGaCgACCACGCGCAc -3'
miRNA:   3'- caGCGGuu--CGCGCcG-UGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 14556 0.66 0.401894
Target:  5'- gGUCGCgGAccucgcGCGCGG-ACUGCGCGCc- -3'
miRNA:   3'- -CAGCGgUU------CGCGCCgUGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 52304 0.66 0.393042
Target:  5'- --aGCCGAGCucggcgacGCGGC-CCAUGUGCu- -3'
miRNA:   3'- cagCGGUUCG--------CGCCGuGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 46242 0.66 0.429193
Target:  5'- -gCGCCGc-CGCGGCugCcgccucGCGCGCGa -3'
miRNA:   3'- caGCGGUucGCGCCGugG------UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 43207 0.66 0.419972
Target:  5'- --aGCCcuGCG-GcGCGCCGCGCGCu- -3'
miRNA:   3'- cagCGGuuCGCgC-CGUGGUGCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.