miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 5' -61 NC_005262.1 + 63689 0.66 0.429193
Target:  5'- gGUCGCC-GGC-CGGUGaCAUGCGCAg -3'
miRNA:   3'- -CAGCGGuUCGcGCCGUgGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 63515 0.7 0.220378
Target:  5'- cGUgGCCGucucAGCaGCGGCACUcaGCGCGUGUa -3'
miRNA:   3'- -CAgCGGU----UCG-CGCCGUGG--UGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 62101 0.74 0.116729
Target:  5'- cGUCGCCGc-CGCGGCaACCGCGuCGCGg -3'
miRNA:   3'- -CAGCGGUucGCGCCG-UGGUGC-GCGUa -5'
23865 5' -61 NC_005262.1 + 61800 0.66 0.410871
Target:  5'- uUCGCCu-GCGCGGCGCaugccucgGCGCu- -3'
miRNA:   3'- cAGCGGuuCGCGCCGUGgug-----CGCGua -5'
23865 5' -61 NC_005262.1 + 61316 1.05 0.000517
Target:  5'- gGUCGCCAAGCGCGGCACCACGCGCAUg -3'
miRNA:   3'- -CAGCGGUUCGCGCCGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 61136 0.7 0.25008
Target:  5'- --gGCCAGGaCGCcgcccGGCGCCGCGCagGCAUg -3'
miRNA:   3'- cagCGGUUC-GCG-----CCGUGGUGCG--CGUA- -5'
23865 5' -61 NC_005262.1 + 60944 0.68 0.31928
Target:  5'- uUCgGCCAAGCucguGCGGgcaCGCCAgCGCGCAa -3'
miRNA:   3'- cAG-CGGUUCG----CGCC---GUGGU-GCGCGUa -5'
23865 5' -61 NC_005262.1 + 60635 0.7 0.231881
Target:  5'- -aCGCUggcGAGCgGCGaGCACCGCGgGCAa -3'
miRNA:   3'- caGCGG---UUCG-CGC-CGUGGUGCgCGUa -5'
23865 5' -61 NC_005262.1 + 60053 0.67 0.36726
Target:  5'- aUCGCCugagccGCGCGGaacccauCCAgGCGCAg -3'
miRNA:   3'- cAGCGGuu----CGCGCCgu-----GGUgCGCGUa -5'
23865 5' -61 NC_005262.1 + 59703 0.67 0.350729
Target:  5'- -cCGCCAcGCG-GGCGCUACGuCGCc- -3'
miRNA:   3'- caGCGGUuCGCgCCGUGGUGC-GCGua -5'
23865 5' -61 NC_005262.1 + 59374 0.69 0.256404
Target:  5'- -aCGCCGAGCuccaGGCGCU-CGCGCAg -3'
miRNA:   3'- caGCGGUUCGcg--CCGUGGuGCGCGUa -5'
23865 5' -61 NC_005262.1 + 59234 0.77 0.069044
Target:  5'- -cCGCCGcuGGCGCGagauGCGCCGCGCGCGc -3'
miRNA:   3'- caGCGGU--UCGCGC----CGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 59140 0.75 0.096356
Target:  5'- --gGCCGGGcCGCGuCGCCGCGCGCAUg -3'
miRNA:   3'- cagCGGUUC-GCGCcGUGGUGCGCGUA- -5'
23865 5' -61 NC_005262.1 + 58870 0.67 0.36726
Target:  5'- -aCGCC-GGCGCaGC-CCGCGCGUu- -3'
miRNA:   3'- caGCGGuUCGCGcCGuGGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 58716 0.67 0.36726
Target:  5'- -cCGCCGAGC-CGGUcgCACGCGCc- -3'
miRNA:   3'- caGCGGUUCGcGCCGugGUGCGCGua -5'
23865 5' -61 NC_005262.1 + 58656 0.66 0.428266
Target:  5'- -gCGCCGAGCaggaucaGCGcCGCCcguCGCGCAUg -3'
miRNA:   3'- caGCGGUUCG-------CGCcGUGGu--GCGCGUA- -5'
23865 5' -61 NC_005262.1 + 58202 0.71 0.19883
Target:  5'- cGUCGCCugcGGagaGCGGCGCCGCcCGUAc -3'
miRNA:   3'- -CAGCGGu--UCg--CGCCGUGGUGcGCGUa -5'
23865 5' -61 NC_005262.1 + 57743 0.71 0.188759
Target:  5'- aUCGUCAAgGCGCucgagGGCAUUGCGCGCAa -3'
miRNA:   3'- cAGCGGUU-CGCG-----CCGUGGUGCGCGUa -5'
23865 5' -61 NC_005262.1 + 57687 0.69 0.27413
Target:  5'- -gCGCCGGGCGCGGCAaggugcuuUCgguaggccgccacgACGCGCGc -3'
miRNA:   3'- caGCGGUUCGCGCCGU--------GG--------------UGCGCGUa -5'
23865 5' -61 NC_005262.1 + 56258 0.69 0.289994
Target:  5'- uGUCGUCGAGCGC-GC-CgACGCGCc- -3'
miRNA:   3'- -CAGCGGUUCGCGcCGuGgUGCGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.