miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23866 5' -53.2 NC_005262.1 + 17158 0.66 0.878856
Target:  5'- cGCug--UCGGCCAucAGCgugcccuucaucgcgUCGgGCGGGa -3'
miRNA:   3'- cCGuuaaAGCCGGU--UCG---------------AGCaCGCCC- -5'
23866 5' -53.2 NC_005262.1 + 7516 0.66 0.87578
Target:  5'- cGCAuccaUCGGgCAGGUUCG-GCGGc -3'
miRNA:   3'- cCGUuaa-AGCCgGUUCGAGCaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 43387 0.66 0.867916
Target:  5'- cGGCGAUgcgagcaUCGGCggCGAGCUCaacgGCGcGGc -3'
miRNA:   3'- -CCGUUAa------AGCCG--GUUCGAGca--CGC-CC- -5'
23866 5' -53.2 NC_005262.1 + 17347 0.66 0.859807
Target:  5'- cGGCAuucgggucCGGCgCGGGCggcgCG-GCGGGc -3'
miRNA:   3'- -CCGUuaaa----GCCG-GUUCGa---GCaCGCCC- -5'
23866 5' -53.2 NC_005262.1 + 53122 0.66 0.859807
Target:  5'- uGCAGgaugcgUUCGGCCu-GCUCGUuuGCGa- -3'
miRNA:   3'- cCGUUa-----AAGCCGGuuCGAGCA--CGCcc -5'
23866 5' -53.2 NC_005262.1 + 9231 0.66 0.859807
Target:  5'- uGGCG---UCGGCCGccAG-UCGUGaGGGg -3'
miRNA:   3'- -CCGUuaaAGCCGGU--UCgAGCACgCCC- -5'
23866 5' -53.2 NC_005262.1 + 43641 0.66 0.858983
Target:  5'- uGGCGcgUUCGucggucucacuGUCGAGCUgGUGCgucggcaGGGg -3'
miRNA:   3'- -CCGUuaAAGC-----------CGGUUCGAgCACG-------CCC- -5'
23866 5' -53.2 NC_005262.1 + 51024 0.66 0.851462
Target:  5'- gGGCGuuua-GGCCGuuGUUCGUaugcaGCGGGa -3'
miRNA:   3'- -CCGUuaaagCCGGUu-CGAGCA-----CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 57287 0.66 0.842887
Target:  5'- cGGCGAggUCGGCgCGcugaUCGUcgaGCGGGu -3'
miRNA:   3'- -CCGUUaaAGCCG-GUucg-AGCA---CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 46253 0.66 0.842887
Target:  5'- cGGCGcgUUCGcGCaagGGCUCaUGCaGGGc -3'
miRNA:   3'- -CCGUuaAAGC-CGgu-UCGAGcACG-CCC- -5'
23866 5' -53.2 NC_005262.1 + 38894 0.67 0.837636
Target:  5'- cGGCGuccuccggcUGGCCGAGCUCGccuucacgcgccgGCGGa -3'
miRNA:   3'- -CCGUuaaa-----GCCGGUUCGAGCa------------CGCCc -5'
23866 5' -53.2 NC_005262.1 + 13496 0.67 0.836753
Target:  5'- cGGCuccucaauccgcgCGGCCGucacgGGCUCGgccggcGCGGGc -3'
miRNA:   3'- -CCGuuaaa--------GCCGGU-----UCGAGCa-----CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 52564 0.67 0.825085
Target:  5'- cGCGAUcgUCGcuGUCGAGCUCG-GCGcGGc -3'
miRNA:   3'- cCGUUAa-AGC--CGGUUCGAGCaCGC-CC- -5'
23866 5' -53.2 NC_005262.1 + 52291 0.67 0.825085
Target:  5'- aGGCAcacgaugCaGCCGAGCUCGgcgacGCGGc -3'
miRNA:   3'- -CCGUuaaa---GcCGGUUCGAGCa----CGCCc -5'
23866 5' -53.2 NC_005262.1 + 20112 0.67 0.806473
Target:  5'- cGCGAaUUCGGCCcGGCUUGgcuUGCGu- -3'
miRNA:   3'- cCGUUaAAGCCGGuUCGAGC---ACGCcc -5'
23866 5' -53.2 NC_005262.1 + 50273 0.67 0.804571
Target:  5'- gGGCGcgcccgcgcCGGCCGAGCcCGUGaCGGc -3'
miRNA:   3'- -CCGUuaaa-----GCCGGUUCGaGCAC-GCCc -5'
23866 5' -53.2 NC_005262.1 + 35649 0.67 0.796889
Target:  5'- gGGCGAUgggcuacUCGguGCCGcAGCUCGUgcucacgucgaGCGGGc -3'
miRNA:   3'- -CCGUUAa------AGC--CGGU-UCGAGCA-----------CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 54403 0.67 0.796889
Target:  5'- gGGCAAcgUCGuGCgCAAGCUC--GCGGa -3'
miRNA:   3'- -CCGUUaaAGC-CG-GUUCGAGcaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 49469 0.68 0.787134
Target:  5'- cGCAAcUUCGccGCCcAGCUCG-GCGGu -3'
miRNA:   3'- cCGUUaAAGC--CGGuUCGAGCaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 11584 0.68 0.787134
Target:  5'- cGGCGg---CGGCCAGcGCUCGaGCGa- -3'
miRNA:   3'- -CCGUuaaaGCCGGUU-CGAGCaCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.