Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 60477 | 1.05 | 0.002203 |
Target: 5'- cAAGAGCAAGACCAACAGCUCGCACCUc -3' miRNA: 3'- -UUCUCGUUCUGGUUGUCGAGCGUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 49327 | 0.73 | 0.337177 |
Target: 5'- cAGGGCAuGACCGACgAGCaggcgCGCGCCg -3' miRNA: 3'- uUCUCGUuCUGGUUG-UCGa----GCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 5318 | 0.73 | 0.354145 |
Target: 5'- cGGAGCu-GGCCGGCAGgagcUUCGCACCg -3' miRNA: 3'- uUCUCGuuCUGGUUGUC----GAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 54907 | 0.72 | 0.389852 |
Target: 5'- ---cGCcAGuuCGACGGCUCGCACCUg -3' miRNA: 3'- uucuCGuUCugGUUGUCGAGCGUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 51337 | 0.71 | 0.437668 |
Target: 5'- --cGGCAAGAUCGaauccgccauGCAGCUCGgCACCg -3' miRNA: 3'- uucUCGUUCUGGU----------UGUCGAGC-GUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 55900 | 0.7 | 0.488676 |
Target: 5'- -uGA-CGAG-CCAACAGCUCGCGCa- -3' miRNA: 3'- uuCUcGUUCuGGUUGUCGAGCGUGga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 10482 | 0.7 | 0.509852 |
Target: 5'- --cAGCGGcGACCAGCAGCa-GCGCCa -3' miRNA: 3'- uucUCGUU-CUGGUUGUCGagCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 20574 | 0.7 | 0.531403 |
Target: 5'- -cGAGCAGcccGGCgAGCAGCgcgcggCGCGCCg -3' miRNA: 3'- uuCUCGUU---CUGgUUGUCGa-----GCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 11214 | 0.7 | 0.531403 |
Target: 5'- ---uGCAAGAUCGAgAGC-CGCGCCg -3' miRNA: 3'- uucuCGUUCUGGUUgUCGaGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 27305 | 0.7 | 0.531403 |
Target: 5'- -cGAGCAAGAUCGGCAGCaUCauccacgacCACCUg -3' miRNA: 3'- uuCUCGUUCUGGUUGUCG-AGc--------GUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 55563 | 0.69 | 0.553275 |
Target: 5'- cAAGGGCAucGACCcggcCGGCUCGCAgCg -3' miRNA: 3'- -UUCUCGUu-CUGGuu--GUCGAGCGUgGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 57481 | 0.69 | 0.57986 |
Target: 5'- cGAGGGCGAGaagccgGCCGACgaggcgccgaaguucAGCgUCGCGCCg -3' miRNA: 3'- -UUCUCGUUC------UGGUUG---------------UCG-AGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 52185 | 0.69 | 0.597735 |
Target: 5'- cGAGGGCAuGACCAGCGuGCaggagucgaaGCGCCUg -3' miRNA: 3'- -UUCUCGUuCUGGUUGU-CGag--------CGUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 58660 | 0.68 | 0.608949 |
Target: 5'- -cGAGCAGGAUCAGCGccGCccgUCGCGCa- -3' miRNA: 3'- uuCUCGUUCUGGUUGU--CG---AGCGUGga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 46637 | 0.68 | 0.630305 |
Target: 5'- gAAGGGCAcgcugauGGCCGACAGCggcagcaUgGCGCCg -3' miRNA: 3'- -UUCUCGUu------CUGGUUGUCG-------AgCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 36943 | 0.68 | 0.63143 |
Target: 5'- cGGuGcCGAGAUCAcCAcGCUCGCGCCg -3' miRNA: 3'- uUCuC-GUUCUGGUuGU-CGAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 17254 | 0.68 | 0.642676 |
Target: 5'- cGGGAGCGGcGGCCGGC-GC-CGCGCUg -3' miRNA: 3'- -UUCUCGUU-CUGGUUGuCGaGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 24778 | 0.68 | 0.642676 |
Target: 5'- -uGAGgAAGauGCCGGCAccauucguguuGCUCGCGCCa -3' miRNA: 3'- uuCUCgUUC--UGGUUGU-----------CGAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 44815 | 0.67 | 0.665128 |
Target: 5'- gAAGGuCAcuGACCAGCAGCUCGCGa-- -3' miRNA: 3'- -UUCUcGUu-CUGGUUGUCGAGCGUgga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 29822 | 0.67 | 0.665128 |
Target: 5'- ---cGCAcGAcguCCAGCAGCUCGaCGCCg -3' miRNA: 3'- uucuCGUuCU---GGUUGUCGAGC-GUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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