Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 5318 | 0.73 | 0.354145 |
Target: 5'- cGGAGCu-GGCCGGCAGgagcUUCGCACCg -3' miRNA: 3'- uUCUCGuuCUGGUUGUC----GAGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 5825 | 0.66 | 0.741009 |
Target: 5'- gGAGAuGCGGGcgcGCCAauuucaaGCGcGCUCGCGCCc -3' miRNA: 3'- -UUCU-CGUUC---UGGU-------UGU-CGAGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 7525 | 0.66 | 0.763202 |
Target: 5'- -cGGGCAGGuuCGGCGGCgcgucggCGCGCUc -3' miRNA: 3'- uuCUCGUUCugGUUGUCGa------GCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 10482 | 0.7 | 0.509852 |
Target: 5'- --cAGCGGcGACCAGCAGCa-GCGCCa -3' miRNA: 3'- uucUCGUU-CUGGUUGUCGagCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 11182 | 0.67 | 0.698536 |
Target: 5'- -cGAGCcGGugCGcuuCAGCUCGC-CCg -3' miRNA: 3'- uuCUCGuUCugGUu--GUCGAGCGuGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 11214 | 0.7 | 0.531403 |
Target: 5'- ---uGCAAGAUCGAgAGC-CGCGCCg -3' miRNA: 3'- uucuCGUUCUGGUUgUCGaGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 13522 | 0.66 | 0.752704 |
Target: 5'- -cGGGCucGGCCGGC-GCgggCGCGCCc -3' miRNA: 3'- uuCUCGuuCUGGUUGuCGa--GCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 13759 | 0.66 | 0.77356 |
Target: 5'- cGGGAGCA--GCCGGCgccGGCUCGgGCUUc -3' miRNA: 3'- -UUCUCGUucUGGUUG---UCGAGCgUGGA- -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 14286 | 0.66 | 0.763202 |
Target: 5'- -cGAGC-AGGCCcuCGGCgaUCGCGCUg -3' miRNA: 3'- uuCUCGuUCUGGuuGUCG--AGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 15603 | 0.66 | 0.752704 |
Target: 5'- gAGGAGCGcGugCGGCAGgagCGCAUCg -3' miRNA: 3'- -UUCUCGUuCugGUUGUCga-GCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 17254 | 0.68 | 0.642676 |
Target: 5'- cGGGAGCGGcGGCCGGC-GC-CGCGCUg -3' miRNA: 3'- -UUCUCGUU-CUGGUUGuCGaGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 20574 | 0.7 | 0.531403 |
Target: 5'- -cGAGCAGcccGGCgAGCAGCgcgcggCGCGCCg -3' miRNA: 3'- uuCUCGUU---CUGgUUGUCGa-----GCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 21235 | 0.67 | 0.698536 |
Target: 5'- -cGAGCGAGGgaAGCGGCUCGUuuugauCCg -3' miRNA: 3'- uuCUCGUUCUggUUGUCGAGCGu-----GGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 22673 | 0.67 | 0.665128 |
Target: 5'- cAGGGCGcGGACCAgugcGCAGa-CGCGCCUc -3' miRNA: 3'- uUCUCGU-UCUGGU----UGUCgaGCGUGGA- -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 24778 | 0.68 | 0.642676 |
Target: 5'- -uGAGgAAGauGCCGGCAccauucguguuGCUCGCGCCa -3' miRNA: 3'- uuCUCgUUC--UGGUUGU-----------CGAGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 24974 | 0.66 | 0.77356 |
Target: 5'- -uGAGCAcgcgAGACgguCAGCGuauccguuGCUCGCGCCg -3' miRNA: 3'- uuCUCGU----UCUG---GUUGU--------CGAGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 25192 | 0.67 | 0.665128 |
Target: 5'- cAAGGGCGAcGACCAggacgacgacgaAgGGCUCGUGCUg -3' miRNA: 3'- -UUCUCGUU-CUGGU------------UgUCGAGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 25729 | 0.67 | 0.676312 |
Target: 5'- --cAGCAAGaucgcGCCAGCGGC-CGUGCCg -3' miRNA: 3'- uucUCGUUC-----UGGUUGUCGaGCGUGGa -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 26019 | 0.66 | 0.742078 |
Target: 5'- cGAGGGCAcGuacuacgcCCAGCAGCUCGcCGCg- -3' miRNA: 3'- -UUCUCGUuCu-------GGUUGUCGAGC-GUGga -5' |
|||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 27305 | 0.7 | 0.531403 |
Target: 5'- -cGAGCAAGAUCGGCAGCaUCauccacgacCACCUg -3' miRNA: 3'- uuCUCGUUCUGGUUGUCG-AGc--------GUGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home