Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23867 | 5' | -54.2 | NC_005262.1 | + | 29822 | 0.67 | 0.665128 |
Target: 5'- ---cGCAcGAcguCCAGCAGCUCGaCGCCg -3' miRNA: 3'- uucuCGUuCU---GGUUGUCGAGC-GUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 30050 | 0.67 | 0.687451 |
Target: 5'- -cGGGCAAGACCGACGauGCUgccggcgacgaCGaCGCCg -3' miRNA: 3'- uuCUCGUUCUGGUUGU--CGA-----------GC-GUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 31813 | 0.67 | 0.665128 |
Target: 5'- -cGAGCGGGGCCAugAuGUcggUCGCugCg -3' miRNA: 3'- uuCUCGUUCUGGUugU-CG---AGCGugGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 33182 | 0.66 | 0.72049 |
Target: 5'- -cGGGCAAGACCuacCAcUUUGCGCCg -3' miRNA: 3'- uuCUCGUUCUGGuu-GUcGAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 36943 | 0.68 | 0.63143 |
Target: 5'- cGGuGcCGAGAUCAcCAcGCUCGCGCCg -3' miRNA: 3'- uUCuC-GUUCUGGUuGU-CGAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 40565 | 0.66 | 0.752704 |
Target: 5'- -cGGGCAAcACCGGCGGUgccgcgaccgUCGCGCUg -3' miRNA: 3'- uuCUCGUUcUGGUUGUCG----------AGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 44815 | 0.67 | 0.665128 |
Target: 5'- gAAGGuCAcuGACCAGCAGCUCGCGa-- -3' miRNA: 3'- -UUCUcGUu-CUGGUUGUCGAGCGUgga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 46637 | 0.68 | 0.630305 |
Target: 5'- gAAGGGCAcgcugauGGCCGACAGCggcagcaUgGCGCCg -3' miRNA: 3'- -UUCUCGUu------CUGGUUGUCG-------AgCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 46992 | 0.67 | 0.698536 |
Target: 5'- -cGuGCAGGAacuCCAugAGCUCGCcguCCg -3' miRNA: 3'- uuCuCGUUCU---GGUugUCGAGCGu--GGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 49327 | 0.73 | 0.337177 |
Target: 5'- cAGGGCAuGACCGACgAGCaggcgCGCGCCg -3' miRNA: 3'- uUCUCGUuCUGGUUG-UCGa----GCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 49546 | 0.67 | 0.665128 |
Target: 5'- cAGAGCGcgcuCCAGCAGgUCGCGCa- -3' miRNA: 3'- uUCUCGUucu-GGUUGUCgAGCGUGga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 50998 | 0.66 | 0.763202 |
Target: 5'- -cGAGC-AGGCCAAggaagcgacCGGCgacCGCGCCg -3' miRNA: 3'- uuCUCGuUCUGGUU---------GUCGa--GCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 51337 | 0.71 | 0.437668 |
Target: 5'- --cGGCAAGAUCGaauccgccauGCAGCUCGgCACCg -3' miRNA: 3'- uucUCGUUCUGGU----------UGUCGAGC-GUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 52185 | 0.69 | 0.597735 |
Target: 5'- cGAGGGCAuGACCAGCGuGCaggagucgaaGCGCCUg -3' miRNA: 3'- -UUCUCGUuCUGGUUGU-CGag--------CGUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 54907 | 0.72 | 0.389852 |
Target: 5'- ---cGCcAGuuCGACGGCUCGCACCUg -3' miRNA: 3'- uucuCGuUCugGUUGUCGAGCGUGGA- -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 55563 | 0.69 | 0.553275 |
Target: 5'- cAAGGGCAucGACCcggcCGGCUCGCAgCg -3' miRNA: 3'- -UUCUCGUu-CUGGuu--GUCGAGCGUgGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 55900 | 0.7 | 0.488676 |
Target: 5'- -uGA-CGAG-CCAACAGCUCGCGCa- -3' miRNA: 3'- uuCUcGUUCuGGUUGUCGAGCGUGga -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 57481 | 0.69 | 0.57986 |
Target: 5'- cGAGGGCGAGaagccgGCCGACgaggcgccgaaguucAGCgUCGCGCCg -3' miRNA: 3'- -UUCUCGUUC------UGGUUG---------------UCG-AGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 57528 | 0.66 | 0.752704 |
Target: 5'- -cGGGCAucGACCGcgauCAGgUCGUACCg -3' miRNA: 3'- uuCUCGUu-CUGGUu---GUCgAGCGUGGa -5' |
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23867 | 5' | -54.2 | NC_005262.1 | + | 58660 | 0.68 | 0.608949 |
Target: 5'- -cGAGCAGGAUCAGCGccGCccgUCGCGCa- -3' miRNA: 3'- uuCUCGUUCUGGUUGU--CG---AGCGUGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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