miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23867 5' -54.2 NC_005262.1 + 25192 0.67 0.665128
Target:  5'- cAAGGGCGAcGACCAggacgacgacgaAgGGCUCGUGCUg -3'
miRNA:   3'- -UUCUCGUU-CUGGU------------UgUCGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 22673 0.67 0.665128
Target:  5'- cAGGGCGcGGACCAgugcGCAGa-CGCGCCUc -3'
miRNA:   3'- uUCUCGU-UCUGGU----UGUCgaGCGUGGA- -5'
23867 5' -54.2 NC_005262.1 + 44815 0.67 0.665128
Target:  5'- gAAGGuCAcuGACCAGCAGCUCGCGa-- -3'
miRNA:   3'- -UUCUcGUu-CUGGUUGUCGAGCGUgga -5'
23867 5' -54.2 NC_005262.1 + 24778 0.68 0.642676
Target:  5'- -uGAGgAAGauGCCGGCAccauucguguuGCUCGCGCCa -3'
miRNA:   3'- uuCUCgUUC--UGGUUGU-----------CGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 17254 0.68 0.642676
Target:  5'- cGGGAGCGGcGGCCGGC-GC-CGCGCUg -3'
miRNA:   3'- -UUCUCGUU-CUGGUUGuCGaGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 36943 0.68 0.63143
Target:  5'- cGGuGcCGAGAUCAcCAcGCUCGCGCCg -3'
miRNA:   3'- uUCuC-GUUCUGGUuGU-CGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 46637 0.68 0.630305
Target:  5'- gAAGGGCAcgcugauGGCCGACAGCggcagcaUgGCGCCg -3'
miRNA:   3'- -UUCUCGUu------CUGGUUGUCG-------AgCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 58660 0.68 0.608949
Target:  5'- -cGAGCAGGAUCAGCGccGCccgUCGCGCa- -3'
miRNA:   3'- uuCUCGUUCUGGUUGU--CG---AGCGUGga -5'
23867 5' -54.2 NC_005262.1 + 52185 0.69 0.597735
Target:  5'- cGAGGGCAuGACCAGCGuGCaggagucgaaGCGCCUg -3'
miRNA:   3'- -UUCUCGUuCUGGUUGU-CGag--------CGUGGA- -5'
23867 5' -54.2 NC_005262.1 + 57481 0.69 0.57986
Target:  5'- cGAGGGCGAGaagccgGCCGACgaggcgccgaaguucAGCgUCGCGCCg -3'
miRNA:   3'- -UUCUCGUUC------UGGUUG---------------UCG-AGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 55563 0.69 0.553275
Target:  5'- cAAGGGCAucGACCcggcCGGCUCGCAgCg -3'
miRNA:   3'- -UUCUCGUu-CUGGuu--GUCGAGCGUgGa -5'
23867 5' -54.2 NC_005262.1 + 20574 0.7 0.531403
Target:  5'- -cGAGCAGcccGGCgAGCAGCgcgcggCGCGCCg -3'
miRNA:   3'- uuCUCGUU---CUGgUUGUCGa-----GCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 27305 0.7 0.531403
Target:  5'- -cGAGCAAGAUCGGCAGCaUCauccacgacCACCUg -3'
miRNA:   3'- uuCUCGUUCUGGUUGUCG-AGc--------GUGGA- -5'
23867 5' -54.2 NC_005262.1 + 11214 0.7 0.531403
Target:  5'- ---uGCAAGAUCGAgAGC-CGCGCCg -3'
miRNA:   3'- uucuCGUUCUGGUUgUCGaGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 10482 0.7 0.509852
Target:  5'- --cAGCGGcGACCAGCAGCa-GCGCCa -3'
miRNA:   3'- uucUCGUU-CUGGUUGUCGagCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 55900 0.7 0.488676
Target:  5'- -uGA-CGAG-CCAACAGCUCGCGCa- -3'
miRNA:   3'- uuCUcGUUCuGGUUGUCGAGCGUGga -5'
23867 5' -54.2 NC_005262.1 + 51337 0.71 0.437668
Target:  5'- --cGGCAAGAUCGaauccgccauGCAGCUCGgCACCg -3'
miRNA:   3'- uucUCGUUCUGGU----------UGUCGAGC-GUGGa -5'
23867 5' -54.2 NC_005262.1 + 54907 0.72 0.389852
Target:  5'- ---cGCcAGuuCGACGGCUCGCACCUg -3'
miRNA:   3'- uucuCGuUCugGUUGUCGAGCGUGGA- -5'
23867 5' -54.2 NC_005262.1 + 5318 0.73 0.354145
Target:  5'- cGGAGCu-GGCCGGCAGgagcUUCGCACCg -3'
miRNA:   3'- uUCUCGuuCUGGUUGUC----GAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 49327 0.73 0.337177
Target:  5'- cAGGGCAuGACCGACgAGCaggcgCGCGCCg -3'
miRNA:   3'- uUCUCGUuCUGGUUG-UCGa----GCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.