miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 60098 1.09 0.001062
Target:  5'- gUCAGAUUGUCGGCGCCGGCAUCACCGu -3'
miRNA:   3'- -AGUCUAACAGCCGCGGCCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 41652 0.82 0.088158
Target:  5'- gUCAGGUUGUuuccggCGGCGCCGuCAUCGCCGc -3'
miRNA:   3'- -AGUCUAACA------GCCGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 11640 0.76 0.215912
Target:  5'- aUCGGcucggCGGCGCCGGCGUCGCg- -3'
miRNA:   3'- -AGUCuaacaGCCGCGGCCGUAGUGgc -5'
23869 3' -56.2 NC_005262.1 + 58919 0.76 0.221575
Target:  5'- gCAGGUcgaGUCGGCGCuCGGCAagcugCGCCGc -3'
miRNA:   3'- aGUCUAa--CAGCCGCG-GCCGUa----GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 41410 0.75 0.258252
Target:  5'- ------cGUCGGCGCCGGCAccucguaugCGCCGa -3'
miRNA:   3'- agucuaaCAGCCGCGGCCGUa--------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 53447 0.73 0.338113
Target:  5'- cCAGAagcgCGGCGCCGGCGUCGaggacaaCGg -3'
miRNA:   3'- aGUCUaacaGCCGCGGCCGUAGUg------GC- -5'
23869 3' -56.2 NC_005262.1 + 32730 0.7 0.444009
Target:  5'- uUCAGGUcggcgagcgcGUCGGCGUCGGUcagCACCa -3'
miRNA:   3'- -AGUCUAa---------CAGCCGCGGCCGua-GUGGc -5'
23869 3' -56.2 NC_005262.1 + 45883 0.7 0.473268
Target:  5'- ------cGUCGGCGCCgaucGGCGgcUCGCCGa -3'
miRNA:   3'- agucuaaCAGCCGCGG----CCGU--AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 38527 0.7 0.473268
Target:  5'- aUCAGGUUG-CGGUGCCagaGGCGgcgcaggaGCCGg -3'
miRNA:   3'- -AGUCUAACaGCCGCGG---CCGUag------UGGC- -5'
23869 3' -56.2 NC_005262.1 + 59043 0.7 0.483236
Target:  5'- cUCAGugauccgUGGCGCCGGCAggagcucgagCACCGc -3'
miRNA:   3'- -AGUCuaaca--GCCGCGGCCGUa---------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 13778 0.7 0.493304
Target:  5'- cUCGGGcuucacuucgGUgGGCGCCGGCGcggcuUCAUCGg -3'
miRNA:   3'- -AGUCUaa--------CAgCCGCGGCCGU-----AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 9788 0.7 0.497358
Target:  5'- gCAGGUUGcCgugcuucgccgugaaGGCGUCguaGGCAUCGCCGa -3'
miRNA:   3'- aGUCUAACaG---------------CCGCGG---CCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 12414 0.69 0.503467
Target:  5'- gUCAGGcg--CGGCcuugGCCGGCGUCGCgGa -3'
miRNA:   3'- -AGUCUaacaGCCG----CGGCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 22113 0.69 0.51372
Target:  5'- aUAGAUgccgaUGcCGGUGCCGGCGgcgaugacggCGCCGc -3'
miRNA:   3'- aGUCUA-----ACaGCCGCGGCCGUa---------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 3227 0.69 0.524057
Target:  5'- aCAGGUagaccgcGcCGaGCGCCGGCGUCAgCGu -3'
miRNA:   3'- aGUCUAa------CaGC-CGCGGCCGUAGUgGC- -5'
23869 3' -56.2 NC_005262.1 + 19119 0.69 0.524057
Target:  5'- uUCGGA---UCgGGCGCgGGCgcGUCGCCGg -3'
miRNA:   3'- -AGUCUaacAG-CCGCGgCCG--UAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 32705 0.69 0.534472
Target:  5'- -aGGAUUGUCGG-GCCgcGGC-UCGCCc -3'
miRNA:   3'- agUCUAACAGCCgCGG--CCGuAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 29042 0.69 0.534472
Target:  5'- --cGAg---CGGCGCCGGCAcgacgcgCACCGu -3'
miRNA:   3'- aguCUaacaGCCGCGGCCGUa------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 46405 0.69 0.534472
Target:  5'- cUCGGcAUUGUCGGcCGCCGa-GUCgACCGg -3'
miRNA:   3'- -AGUC-UAACAGCC-GCGGCcgUAG-UGGC- -5'
23869 3' -56.2 NC_005262.1 + 18551 0.69 0.54496
Target:  5'- -gAGGUUGcCGGUcgccgaguuGCCGGCGUUcagGCCGa -3'
miRNA:   3'- agUCUAACaGCCG---------CGGCCGUAG---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.