miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 117 0.66 0.6951
Target:  5'- aCGGAUUG-CGuCGUCGcCGUCGCCGg -3'
miRNA:   3'- aGUCUAACaGCcGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 1929 0.68 0.609012
Target:  5'- gCuGAUcGUCGGCGCCuuGGCGcuggggauuuUCAUCGg -3'
miRNA:   3'- aGuCUAaCAGCCGCGG--CCGU----------AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 1981 0.66 0.705704
Target:  5'- uUCGGGUacUCGaGCGCgaGGCAUgCGCCGc -3'
miRNA:   3'- -AGUCUAacAGC-CGCGg-CCGUA-GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 2641 0.66 0.6951
Target:  5'- cCAGAUcggcccaugccUGcgCGGCGCCgggcGGCGUCcugGCCGc -3'
miRNA:   3'- aGUCUA-----------ACa-GCCGCGG----CCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 3227 0.69 0.524057
Target:  5'- aCAGGUagaccgcGcCGaGCGCCGGCGUCAgCGu -3'
miRNA:   3'- aGUCUAa------CaGC-CGCGGCCGUAGUgGC- -5'
23869 3' -56.2 NC_005262.1 + 4934 0.67 0.630604
Target:  5'- gCGGAg---CuGCGCCGGCgugacGUCGCCGa -3'
miRNA:   3'- aGUCUaacaGcCGCGGCCG-----UAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 5157 0.66 0.684437
Target:  5'- cUCGGcgcgcUGaUCGGUgacgGCCGGCGUCGCgGg -3'
miRNA:   3'- -AGUCua---AC-AGCCG----CGGCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 5310 0.66 0.716239
Target:  5'- -gAGGcgGUCGGagcugGCCGGCAggagcuucgCACCGc -3'
miRNA:   3'- agUCUaaCAGCCg----CGGCCGUa--------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 7610 0.66 0.705704
Target:  5'- gUCGGAUgccgcaugguaGUCGGCGaucaCGGCGUCgAUCa -3'
miRNA:   3'- -AGUCUAa----------CAGCCGCg---GCCGUAG-UGGc -5'
23869 3' -56.2 NC_005262.1 + 9788 0.7 0.497358
Target:  5'- gCAGGUUGcCgugcuucgccgugaaGGCGUCguaGGCAUCGCCGa -3'
miRNA:   3'- aGUCUAACaG---------------CCGCGG---CCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 10975 0.66 0.737058
Target:  5'- -----cUGUCGGCgcGCCGGgAaCGCCGg -3'
miRNA:   3'- agucuaACAGCCG--CGGCCgUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 11640 0.76 0.215912
Target:  5'- aUCGGcucggCGGCGCCGGCGUCGCg- -3'
miRNA:   3'- -AGUCuaacaGCCGCGGCCGUAGUGgc -5'
23869 3' -56.2 NC_005262.1 + 11750 0.66 0.705704
Target:  5'- cCGGAcucgaUGUaGGCGCCGGCgAUCgucauGCCGu -3'
miRNA:   3'- aGUCUa----ACAgCCGCGGCCG-UAG-----UGGC- -5'
23869 3' -56.2 NC_005262.1 + 12414 0.69 0.503467
Target:  5'- gUCAGGcg--CGGCcuugGCCGGCGUCGCgGa -3'
miRNA:   3'- -AGUCUaacaGCCG----CGGCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 12946 0.66 0.737058
Target:  5'- -aAGGg---CGuGCGCgaCGGCAUCGCCGa -3'
miRNA:   3'- agUCUaacaGC-CGCG--GCCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 13716 0.68 0.598241
Target:  5'- gCGGGUucgGUCGGCGCagCGGCcuucGUCuCCGg -3'
miRNA:   3'- aGUCUAa--CAGCCGCG--GCCG----UAGuGGC- -5'
23869 3' -56.2 NC_005262.1 + 13778 0.7 0.493304
Target:  5'- cUCGGGcuucacuucgGUgGGCGCCGGCGcggcuUCAUCGg -3'
miRNA:   3'- -AGUCUaa--------CAgCCGCGGCCGU-----AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 14037 0.67 0.630604
Target:  5'- cCGGAgccUCGGgCGCgGGCGcCGCCGg -3'
miRNA:   3'- aGUCUaacAGCC-GCGgCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 15717 0.66 0.716239
Target:  5'- ------cGUCGGCGCCGGgcggcuCGUCGCgGc -3'
miRNA:   3'- agucuaaCAGCCGCGGCC------GUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 15872 0.68 0.598241
Target:  5'- --cGAUgucGcCGGCGCuCGGCGUCugCa -3'
miRNA:   3'- aguCUAa--CaGCCGCG-GCCGUAGugGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.