miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 60098 1.09 0.001062
Target:  5'- gUCAGAUUGUCGGCGCCGGCAUCACCGu -3'
miRNA:   3'- -AGUCUAACAGCCGCGGCCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 59043 0.7 0.483236
Target:  5'- cUCAGugauccgUGGCGCCGGCAggagcucgagCACCGc -3'
miRNA:   3'- -AGUCuaaca--GCCGCGGCCGUa---------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 58919 0.76 0.221575
Target:  5'- gCAGGUcgaGUCGGCGCuCGGCAagcugCGCCGc -3'
miRNA:   3'- aGUCUAa--CAGCCGCG-GCCGUa----GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 57515 0.67 0.673726
Target:  5'- uUCAGc--GUC-GCGCCGGgCAUCgACCGc -3'
miRNA:   3'- -AGUCuaaCAGcCGCGGCC-GUAG-UGGC- -5'
23869 3' -56.2 NC_005262.1 + 56719 0.66 0.725652
Target:  5'- -aGGAcgUGUCcgaGGCGUCGGCGUUcgacaugGCCGc -3'
miRNA:   3'- agUCUa-ACAG---CCGCGGCCGUAG-------UGGC- -5'
23869 3' -56.2 NC_005262.1 + 53447 0.73 0.338113
Target:  5'- cCAGAagcgCGGCGCCGGCGUCGaggacaaCGg -3'
miRNA:   3'- aGUCUaacaGCCGCGGCCGUAGUg------GC- -5'
23869 3' -56.2 NC_005262.1 + 52327 0.67 0.652201
Target:  5'- cCGGAacaa-GGCGCCGGacgcgUAUCGCCGg -3'
miRNA:   3'- aGUCUaacagCCGCGGCC-----GUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 52144 0.67 0.630604
Target:  5'- cCAGcgUGcagCGcGaCGCCGGCGcCGCCGa -3'
miRNA:   3'- aGUCuaACa--GC-C-GCGGCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 50887 0.66 0.713087
Target:  5'- gCAGGUUGUcguguccagcaggcCGGgGCUGaugcgcacgaGCGUCACCGu -3'
miRNA:   3'- aGUCUAACA--------------GCCgCGGC----------CGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 49844 0.67 0.619803
Target:  5'- --cGAaUGgccCGGUGCCGGCGgcggUACCGg -3'
miRNA:   3'- aguCUaACa--GCCGCGGCCGUa---GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 47993 0.69 0.555514
Target:  5'- -gAGAUggcuuuUGcCGGUGCCGGgGUUGCCGc -3'
miRNA:   3'- agUCUA------ACaGCCGCGGCCgUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 47923 0.68 0.613327
Target:  5'- gCAGAc-GcCGaGCGCCGGCGacaucgaagauuuguUCACCGa -3'
miRNA:   3'- aGUCUaaCaGC-CGCGGCCGU---------------AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 46540 0.67 0.630604
Target:  5'- cCAGcg---CGGCGCCGGC--CGCCGc -3'
miRNA:   3'- aGUCuaacaGCCGCGGCCGuaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 46405 0.69 0.534472
Target:  5'- cUCGGcAUUGUCGGcCGCCGa-GUCgACCGg -3'
miRNA:   3'- -AGUC-UAACAGCC-GCGGCcgUAG-UGGC- -5'
23869 3' -56.2 NC_005262.1 + 46047 0.66 0.726694
Target:  5'- gCAGcgUGUCGucCGCCcGCuUCACCGu -3'
miRNA:   3'- aGUCuaACAGCc-GCGGcCGuAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 45883 0.7 0.473268
Target:  5'- ------cGUCGGCGCCgaucGGCGgcUCGCCGa -3'
miRNA:   3'- agucuaaCAGCCGCGG----CCGU--AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 45450 0.68 0.598241
Target:  5'- cUCGGAaccaucGcCGGCGCgGGCAUCAUgGc -3'
miRNA:   3'- -AGUCUaa----CaGCCGCGgCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 41652 0.82 0.088158
Target:  5'- gUCAGGUUGUuuccggCGGCGCCGuCAUCGCCGc -3'
miRNA:   3'- -AGUCUAACA------GCCGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 41410 0.75 0.258252
Target:  5'- ------cGUCGGCGCCGGCAccucguaugCGCCGa -3'
miRNA:   3'- agucuaaCAGCCGCGGCCGUa--------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 40982 0.68 0.598241
Target:  5'- gUCGGGUUucUGGCGgCGGCGcUCGCUGc -3'
miRNA:   3'- -AGUCUAAcaGCCGCgGCCGU-AGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.