miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 17126 0.67 0.619803
Target:  5'- aUCGGcgggcGUCGGUGCCGGCGcCaugcuGCCGc -3'
miRNA:   3'- -AGUCuaa--CAGCCGCGGCCGUaG-----UGGC- -5'
23869 3' -56.2 NC_005262.1 + 18551 0.69 0.54496
Target:  5'- -gAGGUUGcCGGUcgccgaguuGCCGGCGUUcagGCCGa -3'
miRNA:   3'- agUCUAACaGCCG---------CGGCCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 19119 0.69 0.524057
Target:  5'- uUCGGA---UCgGGCGCgGGCgcGUCGCCGg -3'
miRNA:   3'- -AGUCUaacAG-CCGCGgCCG--UAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 19881 0.66 0.716239
Target:  5'- gUCGGccgcgGUUGGCGCCGcGC-UgACCGc -3'
miRNA:   3'- -AGUCuaa--CAGCCGCGGC-CGuAgUGGC- -5'
23869 3' -56.2 NC_005262.1 + 20171 0.67 0.630604
Target:  5'- cCAGuucugcGcCGGUGCCGGCgagcGUCACCu -3'
miRNA:   3'- aGUCuaa---CaGCCGCGGCCG----UAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 21549 0.68 0.576789
Target:  5'- gCAGugagcgCGGCGCuCGGCAUCggaACCGc -3'
miRNA:   3'- aGUCuaaca-GCCGCG-GCCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 22113 0.69 0.51372
Target:  5'- aUAGAUgccgaUGcCGGUGCCGGCGgcgaugacggCGCCGc -3'
miRNA:   3'- aGUCUA-----ACaGCCGCGGCCGUa---------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 22318 0.68 0.566126
Target:  5'- gUguGAUUGU--GCGCCGGCAUCuggGCUGc -3'
miRNA:   3'- -AguCUAACAgcCGCGGCCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 22555 0.68 0.570385
Target:  5'- gUCAGGUUGUUGaacaucgucaugagcGUGCCGGCAgUCAUaCGg -3'
miRNA:   3'- -AGUCUAACAGC---------------CGCGGCCGU-AGUG-GC- -5'
23869 3' -56.2 NC_005262.1 + 23827 0.69 0.554455
Target:  5'- gCAGGUacUCGGCaacguagGCCGGCA-CGCCGc -3'
miRNA:   3'- aGUCUAacAGCCG-------CGGCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 27141 0.68 0.565062
Target:  5'- --cGAUccgUGUCugguacuGGUGCCGGCA-CACCGg -3'
miRNA:   3'- aguCUA---ACAG-------CCGCGGCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 29042 0.69 0.534472
Target:  5'- --cGAg---CGGCGCCGGCAcgacgcgCACCGu -3'
miRNA:   3'- aguCUaacaGCCGCGGCCGUa------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 31064 0.67 0.662977
Target:  5'- aCGGAgugGUCG--GCCGGCAgcaCGCCGa -3'
miRNA:   3'- aGUCUaa-CAGCcgCGGCCGUa--GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 32705 0.69 0.534472
Target:  5'- -aGGAUUGUCGG-GCCgcGGC-UCGCCc -3'
miRNA:   3'- agUCUAACAGCCgCGG--CCGuAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 32730 0.7 0.444009
Target:  5'- uUCAGGUcggcgagcgcGUCGGCGUCGGUcagCACCa -3'
miRNA:   3'- -AGUCUAa---------CAGCCGCGGCCGua-GUGGc -5'
23869 3' -56.2 NC_005262.1 + 32856 0.67 0.619803
Target:  5'- uUCGGcccgcacgUG-CGGCGCCGaGCuguUCGCCGc -3'
miRNA:   3'- -AGUCua------ACaGCCGCGGC-CGu--AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 33708 0.68 0.613327
Target:  5'- cCGGcgUGUcgucgcccuucuugcCGGCGUCGuCGUCGCCGg -3'
miRNA:   3'- aGUCuaACA---------------GCCGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 37865 0.66 0.716239
Target:  5'- cCGGAaaaGUCGGCGUCGcGCGUgGCg- -3'
miRNA:   3'- aGUCUaa-CAGCCGCGGC-CGUAgUGgc -5'
23869 3' -56.2 NC_005262.1 + 38330 0.68 0.587497
Target:  5'- ------aGUUGGCGagCGGCAUCGCCu -3'
miRNA:   3'- agucuaaCAGCCGCg-GCCGUAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 38527 0.7 0.473268
Target:  5'- aUCAGGUUG-CGGUGCCagaGGCGgcgcaggaGCCGg -3'
miRNA:   3'- -AGUCUAACaGCCGCGG---CCGUag------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.