Results 21 - 40 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 14037 | 0.67 | 0.630604 |
Target: 5'- cCGGAgccUCGGgCGCgGGCGcCGCCGg -3' miRNA: 3'- aGUCUaacAGCC-GCGgCCGUaGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 52144 | 0.67 | 0.630604 |
Target: 5'- cCAGcgUGcagCGcGaCGCCGGCGcCGCCGa -3' miRNA: 3'- aGUCuaACa--GC-C-GCGGCCGUaGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 4934 | 0.67 | 0.630604 |
Target: 5'- gCGGAg---CuGCGCCGGCgugacGUCGCCGa -3' miRNA: 3'- aGUCUaacaGcCGCGGCCG-----UAGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 17126 | 0.67 | 0.619803 |
Target: 5'- aUCGGcgggcGUCGGUGCCGGCGcCaugcuGCCGc -3' miRNA: 3'- -AGUCuaa--CAGCCGCGGCCGUaG-----UGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 33708 | 0.68 | 0.613327 |
Target: 5'- cCGGcgUGUcgucgcccuucuugcCGGCGUCGuCGUCGCCGg -3' miRNA: 3'- aGUCuaACA---------------GCCGCGGCcGUAGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 1929 | 0.68 | 0.609012 |
Target: 5'- gCuGAUcGUCGGCGCCuuGGCGcuggggauuuUCAUCGg -3' miRNA: 3'- aGuCUAaCAGCCGCGG--CCGU----------AGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 15872 | 0.68 | 0.598241 |
Target: 5'- --cGAUgucGcCGGCGCuCGGCGUCugCa -3' miRNA: 3'- aguCUAa--CaGCCGCG-GCCGUAGugGc -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 13716 | 0.68 | 0.598241 |
Target: 5'- gCGGGUucgGUCGGCGCagCGGCcuucGUCuCCGg -3' miRNA: 3'- aGUCUAa--CAGCCGCG--GCCG----UAGuGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 39581 | 0.68 | 0.587497 |
Target: 5'- aUCGGcgUGcCGGCGCa-GCGUCGCgGc -3' miRNA: 3'- -AGUCuaACaGCCGCGgcCGUAGUGgC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 20171 | 0.67 | 0.630604 |
Target: 5'- cCAGuucugcGcCGGUGCCGGCgagcGUCACCu -3' miRNA: 3'- aGUCuaa---CaGCCGCGGCCG----UAGUGGc -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 31064 | 0.67 | 0.662977 |
Target: 5'- aCGGAgugGUCG--GCCGGCAgcaCGCCGa -3' miRNA: 3'- aGUCUaa-CAGCcgCGGCCGUa--GUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 117 | 0.66 | 0.6951 |
Target: 5'- aCGGAUUG-CGuCGUCGcCGUCGCCGg -3' miRNA: 3'- aGUCUAACaGCcGCGGCcGUAGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 38959 | 0.66 | 0.726694 |
Target: 5'- gCAGggUGaucggcaCGGCGCCGGCcgcgAUCGCg- -3' miRNA: 3'- aGUCuaACa------GCCGCGGCCG----UAGUGgc -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 19881 | 0.66 | 0.716239 |
Target: 5'- gUCGGccgcgGUUGGCGCCGcGC-UgACCGc -3' miRNA: 3'- -AGUCuaa--CAGCCGCGGC-CGuAgUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 37865 | 0.66 | 0.716239 |
Target: 5'- cCGGAaaaGUCGGCGUCGcGCGUgGCg- -3' miRNA: 3'- aGUCUaa-CAGCCGCGGC-CGUAgUGgc -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 15717 | 0.66 | 0.716239 |
Target: 5'- ------cGUCGGCGCCGGgcggcuCGUCGCgGc -3' miRNA: 3'- agucuaaCAGCCGCGGCC------GUAGUGgC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 50887 | 0.66 | 0.713087 |
Target: 5'- gCAGGUUGUcguguccagcaggcCGGgGCUGaugcgcacgaGCGUCACCGu -3' miRNA: 3'- aGUCUAACA--------------GCCgCGGC----------CGUAGUGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 11750 | 0.66 | 0.705704 |
Target: 5'- cCGGAcucgaUGUaGGCGCCGGCgAUCgucauGCCGu -3' miRNA: 3'- aGUCUa----ACAgCCGCGGCCG-UAG-----UGGC- -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 7610 | 0.66 | 0.705704 |
Target: 5'- gUCGGAUgccgcaugguaGUCGGCGaucaCGGCGUCgAUCa -3' miRNA: 3'- -AGUCUAa----------CAGCCGCg---GCCGUAG-UGGc -5' |
|||||||
23869 | 3' | -56.2 | NC_005262.1 | + | 1981 | 0.66 | 0.705704 |
Target: 5'- uUCGGGUacUCGaGCGCgaGGCAUgCGCCGc -3' miRNA: 3'- -AGUCUAacAGC-CGCGg-CCGUA-GUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home