Results 41 - 60 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23869 | 5' | -57.7 | NC_005262.1 | + | 60079 | 0.67 | 0.610174 |
Target: 5'- cGCCGcgcGCGACGcGCUGaCGGGcACGAUCa -3' miRNA: 3'- -CGGU---CGCUGC-CGGC-GCUCaUGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 25370 | 0.67 | 0.61442 |
Target: 5'- aGCCGGUG-CGGCaucaucgcgcaggauCGgGAG-ACGGCCGa -3' miRNA: 3'- -CGGUCGCuGCCG---------------GCgCUCaUGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 44672 | 0.67 | 0.5575 |
Target: 5'- cGCCGGCGACGcGCCcGCGcc--CGAuCCGa -3' miRNA: 3'- -CGGUCGCUGC-CGG-CGCucauGUU-GGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 57216 | 0.67 | 0.5575 |
Target: 5'- uGCCGGuCGGCGGCauCGCGAcGcGCGccGCCa -3' miRNA: 3'- -CGGUC-GCUGCCG--GCGCU-CaUGU--UGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 33658 | 0.67 | 0.61442 |
Target: 5'- cGCCGGCGcuucggcgaccagcaGCGGCacgauCGUGGGcuucgcgGCGGCCGg -3' miRNA: 3'- -CGGUCGC---------------UGCCG-----GCGCUCa------UGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 30420 | 0.67 | 0.610174 |
Target: 5'- gGgCGGCGucgacgaucACGGCCgGCGGGUuguCGAUCGg -3' miRNA: 3'- -CgGUCGC---------UGCCGG-CGCUCAu--GUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 26989 | 0.67 | 0.610174 |
Target: 5'- cGCCAGUcACGGCCGU---UGCAGCa- -3' miRNA: 3'- -CGGUCGcUGCCGGCGcucAUGUUGgc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 59116 | 0.67 | 0.608052 |
Target: 5'- uGCC-GCGGCccgauccGGCCGCGGcauggcuGUuCAACCGa -3' miRNA: 3'- -CGGuCGCUG-------CCGGCGCU-------CAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 18352 | 0.67 | 0.600631 |
Target: 5'- cGCCGGCGAUGGUUcCGAGcccgcccauaagccCGGCCGa -3' miRNA: 3'- -CGGUCGCUGCCGGcGCUCau------------GUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 19235 | 0.67 | 0.599572 |
Target: 5'- uGCCuGCGuauCGGCCGgCGAGaACAGgaaCGg -3' miRNA: 3'- -CGGuCGCu--GCCGGC-GCUCaUGUUg--GC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 59463 | 0.67 | 0.588996 |
Target: 5'- gGCCGaugGACGGcCCGCGAGgcUcGCCGu -3' miRNA: 3'- -CGGUcg-CUGCC-GGCGCUCauGuUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 17237 | 0.67 | 0.588996 |
Target: 5'- gGUCGuCGugGGCguCGCGGGagcgGCGGCCGg -3' miRNA: 3'- -CGGUcGCugCCG--GCGCUCa---UGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 62670 | 0.67 | 0.588996 |
Target: 5'- aGCCcGCaGCGGCCGCaGAGcaagagGCGGCgGa -3' miRNA: 3'- -CGGuCGcUGCCGGCG-CUCa-----UGUUGgC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 52715 | 0.67 | 0.578453 |
Target: 5'- uGCCAGCGGgccgcccuuUGGCCGCucGGGcucaggcgacgcUGCGGCCu -3' miRNA: 3'- -CGGUCGCU---------GCCGGCG--CUC------------AUGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 8151 | 0.67 | 0.578453 |
Target: 5'- uGCCGGaCG-CGGCCaCGAGcgcGCGGCCc -3' miRNA: 3'- -CGGUC-GCuGCCGGcGCUCa--UGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 2141 | 0.67 | 0.578453 |
Target: 5'- uCCAGCG-C-GCCGCG-GUACAGCa- -3' miRNA: 3'- cGGUCGCuGcCGGCGCuCAUGUUGgc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 53085 | 0.67 | 0.578453 |
Target: 5'- --gAGCGcCGGCCGCGuGcgcGCGGCCu -3' miRNA: 3'- cggUCGCuGCCGGCGCuCa--UGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 42244 | 0.67 | 0.575298 |
Target: 5'- uCCAgGCGGCGGCaucugcuucaggacCGCGAGcUGCA-CCGc -3' miRNA: 3'- cGGU-CGCUGCCG--------------GCGCUC-AUGUuGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 19549 | 0.67 | 0.567952 |
Target: 5'- aGCCAGUGGCGcgagccaucGCuCGCGAuGUGCAugUu -3' miRNA: 3'- -CGGUCGCUGC---------CG-GCGCU-CAUGUugGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 14059 | 0.67 | 0.565858 |
Target: 5'- cGCCGGCGucggugcggcuuCGGCCGCcGGUuc-GCCGc -3' miRNA: 3'- -CGGUCGCu-----------GCCGGCGcUCAuguUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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