miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 19385 0.66 0.673854
Target:  5'- cGCCAucGUGuGCGGCgCGCGGGUGguAUCc -3'
miRNA:   3'- -CGGU--CGC-UGCCG-GCGCUCAUguUGGc -5'
23869 5' -57.7 NC_005262.1 + 30880 0.66 0.631423
Target:  5'- cGCUGGCGAgcGUCGCGcGUGCGacGCCGc -3'
miRNA:   3'- -CGGUCGCUgcCGGCGCuCAUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 8954 0.66 0.642053
Target:  5'- aGCCGGuCGGCGcGCUGCGuGU-CGGuCCa -3'
miRNA:   3'- -CGGUC-GCUGC-CGGCGCuCAuGUU-GGc -5'
23869 5' -57.7 NC_005262.1 + 27476 0.66 0.652674
Target:  5'- uGCCGGCGAgcgcacCGGCCccccacCGAaGU-CGACCGa -3'
miRNA:   3'- -CGGUCGCU------GCCGGc-----GCU-CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 63715 0.66 0.620794
Target:  5'- aGCguGCGgcGCGGCCgacuucuucGCGAGccGCGGCCu -3'
miRNA:   3'- -CGguCGC--UGCCGG---------CGCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 12521 0.66 0.631423
Target:  5'- -gCAGcCGGCGGCCGgUGAGguuCAGCUu -3'
miRNA:   3'- cgGUC-GCUGCCGGC-GCUCau-GUUGGc -5'
23869 5' -57.7 NC_005262.1 + 41378 0.66 0.63036
Target:  5'- uGCCGGCGAgcaGGCgGCGcucgaucAGUGCgAACgCGg -3'
miRNA:   3'- -CGGUCGCUg--CCGgCGC-------UCAUG-UUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 39221 0.66 0.642053
Target:  5'- gGCCAGCaagcaGGCGGCCGgGAau-UAugCGa -3'
miRNA:   3'- -CGGUCG-----CUGCCGGCgCUcauGUugGC- -5'
23869 5' -57.7 NC_005262.1 + 27161 0.67 0.588996
Target:  5'- uGCCGGCacacCGGCCGCaugguGUGguGCCGu -3'
miRNA:   3'- -CGGUCGcu--GCCGGCGcu---CAUguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60079 0.67 0.610174
Target:  5'- cGCCGcgcGCGACGcGCUGaCGGGcACGAUCa -3'
miRNA:   3'- -CGGU---CGCUGC-CGGC-GCUCaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 63676 0.67 0.5575
Target:  5'- uGCCGGCGACGGC-GaCGAc-GCAAuCCGu -3'
miRNA:   3'- -CGGUCGCUGCCGgC-GCUcaUGUU-GGC- -5'
23869 5' -57.7 NC_005262.1 + 44672 0.67 0.5575
Target:  5'- cGCCGGCGACGcGCCcGCGcc--CGAuCCGa -3'
miRNA:   3'- -CGGUCGCUGC-CGG-CGCucauGUU-GGC- -5'
23869 5' -57.7 NC_005262.1 + 51420 0.67 0.588996
Target:  5'- uGCuCGGCGGC-GCgCGCGAGgGCGauACCGu -3'
miRNA:   3'- -CG-GUCGCUGcCG-GCGCUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 38526 0.67 0.567952
Target:  5'- gGCCGGCaagagcuacACGGUCGCGGugACGAUCGg -3'
miRNA:   3'- -CGGUCGc--------UGCCGGCGCUcaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 46774 0.67 0.577401
Target:  5'- aGgCGGCGAcgcgcgguaucaaCGGCgGCGAGccgAUGACCGa -3'
miRNA:   3'- -CgGUCGCU-------------GCCGgCGCUCa--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 15308 0.67 0.609113
Target:  5'- cGCCgcgcaugGGCgGGCGGCCGuCGAGcaACAGCUu -3'
miRNA:   3'- -CGG-------UCG-CUGCCGGC-GCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 16281 0.67 0.578453
Target:  5'- uGCCuugcuGCGcGCcGCuCGCGGcGUGCAACCGa -3'
miRNA:   3'- -CGGu----CGC-UGcCG-GCGCU-CAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 44851 0.67 0.578453
Target:  5'- gGCgAauGCGugGGcCCGCGAGgACcGCCa -3'
miRNA:   3'- -CGgU--CGCugCC-GGCGCUCaUGuUGGc -5'
23869 5' -57.7 NC_005262.1 + 53488 0.67 0.578453
Target:  5'- gGCuCGGC-ACGGCCGa-AGUGCAgacGCCGc -3'
miRNA:   3'- -CG-GUCGcUGCCGGCgcUCAUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 25370 0.67 0.61442
Target:  5'- aGCCGGUG-CGGCaucaucgcgcaggauCGgGAG-ACGGCCGa -3'
miRNA:   3'- -CGGUCGCuGCCG---------------GCgCUCaUGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.