miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 10460 0.68 0.547103
Target:  5'- aGCCgGGCGGaaGCCGCGAcgacagcgGCGACCa -3'
miRNA:   3'- -CGG-UCGCUgcCGGCGCUca------UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 10501 0.78 0.127069
Target:  5'- cGCCAGCauGGCGGCCagcagcagcGCGGGgGCGGCCGa -3'
miRNA:   3'- -CGGUCG--CUGCCGG---------CGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 10548 0.75 0.220675
Target:  5'- uGCCGacGCGAcCGGCCGCGc--GCAGCCGc -3'
miRNA:   3'- -CGGU--CGCU-GCCGGCGCucaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 10776 0.67 0.610174
Target:  5'- cGCCcGCGcCGGgCGCGcGGUACuGCUGc -3'
miRNA:   3'- -CGGuCGCuGCCgGCGC-UCAUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 11180 0.66 0.673854
Target:  5'- cGCCGaCGACGccGCCGUGAucGUGCGcGCCa -3'
miRNA:   3'- -CGGUcGCUGC--CGGCGCU--CAUGU-UGGc -5'
23869 5' -57.7 NC_005262.1 + 11581 0.75 0.220675
Target:  5'- uGCCGGCGGCGGCCaGCGcucGaGCGACUu -3'
miRNA:   3'- -CGGUCGCUGCCGG-CGCu--CaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 12429 0.66 0.663278
Target:  5'- gGCCGGCGucGCGGaCgGCGcGGUGCcgAGCUGc -3'
miRNA:   3'- -CGGUCGC--UGCC-GgCGC-UCAUG--UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 12521 0.66 0.631423
Target:  5'- -gCAGcCGGCGGCCGgUGAGguuCAGCUu -3'
miRNA:   3'- cgGUC-GCUGCCGGC-GCUCau-GUUGGc -5'
23869 5' -57.7 NC_005262.1 + 12817 0.67 0.564811
Target:  5'- aGCCGGCGcgugaagaaggagcGCGGCCucGCGGGaACcgucguGCCGa -3'
miRNA:   3'- -CGGUCGC--------------UGCCGG--CGCUCaUGu-----UGGC- -5'
23869 5' -57.7 NC_005262.1 + 13509 0.66 0.648427
Target:  5'- gGCgaaGGCGGCGGCaugagauacggaaGCGuGUGCAGCgGc -3'
miRNA:   3'- -CGg--UCGCUGCCGg------------CGCuCAUGUUGgC- -5'
23869 5' -57.7 NC_005262.1 + 13799 0.69 0.447498
Target:  5'- cGCCGGCG-CGGCUucaucgGCGGGaGCGggcGCCGc -3'
miRNA:   3'- -CGGUCGCuGCCGG------CGCUCaUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 13949 0.7 0.418684
Target:  5'- uGCCGGagaaGAUGaGCCGCuGGUGCAccaggggGCCGg -3'
miRNA:   3'- -CGGUCg---CUGC-CGGCGcUCAUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 14059 0.67 0.565858
Target:  5'- cGCCGGCGucggugcggcuuCGGCCGCcGGUuc-GCCGc -3'
miRNA:   3'- -CGGUCGCu-----------GCCGGCGcUCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 15308 0.67 0.609113
Target:  5'- cGCCgcgcaugGGCgGGCGGCCGuCGAGcaACAGCUu -3'
miRNA:   3'- -CGG-------UCG-CUGCCGGC-GCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 15523 0.68 0.515297
Target:  5'- uGCacaaGGCGAugugguuCGGCUGCccacAGUGCAGCCGc -3'
miRNA:   3'- -CGg---UCGCU-------GCCGGCGc---UCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 15723 0.74 0.250301
Target:  5'- cGCCgGGCGGCucGUCGCGgcaGGUGCGACCGa -3'
miRNA:   3'- -CGG-UCGCUGc-CGGCGC---UCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 16062 0.68 0.536769
Target:  5'- gGCCGGCGGCgcaccagauacaGGCgGCGAGccGCcGCCc -3'
miRNA:   3'- -CGGUCGCUG------------CCGgCGCUCa-UGuUGGc -5'
23869 5' -57.7 NC_005262.1 + 16281 0.67 0.578453
Target:  5'- uGCCuugcuGCGcGCcGCuCGCGGcGUGCAACCGa -3'
miRNA:   3'- -CGGu----CGC-UGcCG-GCGCU-CAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 17091 0.69 0.48624
Target:  5'- cGUCGacGCGGCgGGCCGCGAGgagguCcACCGc -3'
miRNA:   3'- -CGGU--CGCUG-CCGGCGCUCau---GuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 17166 0.71 0.342586
Target:  5'- gGCCGGCaaGGCcGCgCGCGAGgacGCGACCGc -3'
miRNA:   3'- -CGGUCG--CUGcCG-GCGCUCa--UGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.