miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 59 0.68 0.516311
Target:  5'- uGCCGGgGA-GGCCGCGgcucgcgaagaAGU-CGGCCGc -3'
miRNA:   3'- -CGGUCgCUgCCGGCGC-----------UCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 206 0.68 0.547103
Target:  5'- cGCCGGCGGgGGCgGCGG----AGCCa -3'
miRNA:   3'- -CGGUCGCUgCCGgCGCUcaugUUGGc -5'
23869 5' -57.7 NC_005262.1 + 239 0.74 0.238074
Target:  5'- cGCCGGCGGCGGCgggacauuucgCGCGGacGUACAcgcGCUGa -3'
miRNA:   3'- -CGGUCGCUGCCG-----------GCGCU--CAUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 1071 0.7 0.438082
Target:  5'- cGCCAGCG-C-GCCGaucaGGGUGCGugCGc -3'
miRNA:   3'- -CGGUCGCuGcCGGCg---CUCAUGUugGC- -5'
23869 5' -57.7 NC_005262.1 + 2141 0.67 0.578453
Target:  5'- uCCAGCG-C-GCCGCG-GUACAGCa- -3'
miRNA:   3'- cGGUCGCuGcCGGCGCuCAUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 2763 0.68 0.547103
Target:  5'- uUCAGC-ACGGCgGCGGGUGCcGCa- -3'
miRNA:   3'- cGGUCGcUGCCGgCGCUCAUGuUGgc -5'
23869 5' -57.7 NC_005262.1 + 3177 0.66 0.642053
Target:  5'- cGCCAGCGuGCGcauggcguucGCCGUGcccuGUAUcGCCGg -3'
miRNA:   3'- -CGGUCGC-UGC----------CGGCGCu---CAUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 3246 0.66 0.64099
Target:  5'- cGCCGGCGucagcgugcccuuGCGGUCGa-AGU-CGACCGu -3'
miRNA:   3'- -CGGUCGC-------------UGCCGGCgcUCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 4090 0.71 0.350621
Target:  5'- uGCCGGCGACGuagcgcCCGCGuGgcgGCAcGCCGa -3'
miRNA:   3'- -CGGUCGCUGCc-----GGCGCuCa--UGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 4575 0.7 0.410531
Target:  5'- cGCCAGCGGCGGCgcugcucgggCGUGAGcGC--CCGc -3'
miRNA:   3'- -CGGUCGCUGCCG----------GCGCUCaUGuuGGC- -5'
23869 5' -57.7 NC_005262.1 + 4801 0.68 0.551255
Target:  5'- gGUCGaagcGCGACGGCgCGgGAGgcgugaggccgccgGCGGCCGg -3'
miRNA:   3'- -CGGU----CGCUGCCG-GCgCUCa-------------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 5069 0.86 0.03739
Target:  5'- gGCCcGCGGCGGCgGCGcGUGCGACCGg -3'
miRNA:   3'- -CGGuCGCUGCCGgCGCuCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 5178 0.82 0.067526
Target:  5'- gGCCGGCGucGCGGgCGCGGGcGCGGCCGg -3'
miRNA:   3'- -CGGUCGC--UGCCgGCGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 6644 0.76 0.170351
Target:  5'- cGCCGGgGAugucgaccgacaCGGCCGCGAuGUACucGCCGg -3'
miRNA:   3'- -CGGUCgCU------------GCCGGCGCU-CAUGu-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 6875 0.68 0.52548
Target:  5'- cUCGGCGAugcCGGCCGCGAucGCGuuuucgaGCCGc -3'
miRNA:   3'- cGGUCGCU---GCCGGCGCUcaUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 7289 0.69 0.466662
Target:  5'- cGCCGauuCGAgCGGCacguucucgCGCGAGUACGGCCc -3'
miRNA:   3'- -CGGUc--GCU-GCCG---------GCGCUCAUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 7648 0.71 0.342586
Target:  5'- cGCCggcGGCGACGGCuaucucCGCGAGcgGCAcGCCa -3'
miRNA:   3'- -CGG---UCGCUGCCG------GCGCUCa-UGU-UGGc -5'
23869 5' -57.7 NC_005262.1 + 8151 0.67 0.578453
Target:  5'- uGCCGGaCG-CGGCCaCGAGcgcGCGGCCc -3'
miRNA:   3'- -CGGUC-GCuGCCGGcGCUCa--UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 8954 0.66 0.642053
Target:  5'- aGCCGGuCGGCGcGCUGCGuGU-CGGuCCa -3'
miRNA:   3'- -CGGUC-GCUGC-CGGCGCuCAuGUU-GGc -5'
23869 5' -57.7 NC_005262.1 + 9429 0.69 0.457026
Target:  5'- aGCCGGCGAgCGGgUGCGAagcccgcauuGUGCGgcACCa -3'
miRNA:   3'- -CGGUCGCU-GCCgGCGCU----------CAUGU--UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.