miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 63715 0.66 0.620794
Target:  5'- aGCguGCGgcGCGGCCgacuucuucGCGAGccGCGGCCu -3'
miRNA:   3'- -CGguCGC--UGCCGG---------CGCUCa-UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 63676 0.67 0.5575
Target:  5'- uGCCGGCGACGGC-GaCGAc-GCAAuCCGu -3'
miRNA:   3'- -CGGUCGCUGCCGgC-GCUcaUGUU-GGC- -5'
23869 5' -57.7 NC_005262.1 + 63039 0.67 0.5575
Target:  5'- cUCGGCGACGaG-CGCGuGUucACGACCGu -3'
miRNA:   3'- cGGUCGCUGC-CgGCGCuCA--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 62685 0.69 0.457026
Target:  5'- cCCGGCGGCGGCagGgGAGcGCGACg- -3'
miRNA:   3'- cGGUCGCUGCCGg-CgCUCaUGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 62670 0.67 0.588996
Target:  5'- aGCCcGCaGCGGCCGCaGAGcaagagGCGGCgGa -3'
miRNA:   3'- -CGGuCGcUGCCGGCG-CUCa-----UGUUGgC- -5'
23869 5' -57.7 NC_005262.1 + 62405 0.69 0.466662
Target:  5'- aUCAGCGcaAgGGCCGCGAGUGgGuuCCa -3'
miRNA:   3'- cGGUCGC--UgCCGGCGCUCAUgUu-GGc -5'
23869 5' -57.7 NC_005262.1 + 60173 0.69 0.476401
Target:  5'- cCCAGcCGAUGGaCCuCGuGUACAGCCu -3'
miRNA:   3'- cGGUC-GCUGCC-GGcGCuCAUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 60169 0.71 0.384083
Target:  5'- cGCCgugaaGGCGcuCGGCCaGUGGGcgGCAACCGg -3'
miRNA:   3'- -CGG-----UCGCu-GCCGG-CGCUCa-UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60132 1.11 0.000577
Target:  5'- gGCCAGCGACGGCCGCGAGUACAACCGg -3'
miRNA:   3'- -CGGUCGCUGCCGGCGCUCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 60079 0.67 0.610174
Target:  5'- cGCCGcgcGCGACGcGCUGaCGGGcACGAUCa -3'
miRNA:   3'- -CGGU---CGCUGC-CGGC-GCUCaUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 59463 0.67 0.588996
Target:  5'- gGCCGaugGACGGcCCGCGAGgcUcGCCGu -3'
miRNA:   3'- -CGGUcg-CUGCC-GGCGCUCauGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 59308 0.66 0.620794
Target:  5'- uGCCGGaCGGCGGCU-CGGGcaugacgACGGCUGa -3'
miRNA:   3'- -CGGUC-GCUGCCGGcGCUCa------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 59116 0.67 0.608052
Target:  5'- uGCC-GCGGCccgauccGGCCGCGGcauggcuGUuCAACCGa -3'
miRNA:   3'- -CGGuCGCUG-------CCGGCGCU-------CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 58771 0.71 0.36709
Target:  5'- gGCCGGCGAgcaaCuGCCGCugGAG-GCAGCCGa -3'
miRNA:   3'- -CGGUCGCU----GcCGGCG--CUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 58643 0.68 0.547103
Target:  5'- aGUCgAGCGGCcgGGCgCGCGAGUucuACGAUCa -3'
miRNA:   3'- -CGG-UCGCUG--CCG-GCGCUCA---UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 58031 0.69 0.476401
Target:  5'- gGCCuGUuuccgGAUGGCCGCGAGgcCGugCu -3'
miRNA:   3'- -CGGuCG-----CUGCCGGCGCUCauGUugGc -5'
23869 5' -57.7 NC_005262.1 + 57462 0.7 0.410531
Target:  5'- uGCCgcgacuacaAGCGGCGggcGCCGaCGAGagGCGGCCGg -3'
miRNA:   3'- -CGG---------UCGCUGC---CGGC-GCUCa-UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 57216 0.67 0.5575
Target:  5'- uGCCGGuCGGCGGCauCGCGAcGcGCGccGCCa -3'
miRNA:   3'- -CGGUC-GCUGCCG--GCGCU-CaUGU--UGGc -5'
23869 5' -57.7 NC_005262.1 + 56914 0.7 0.409632
Target:  5'- cGCCGGCGAgaucaaGGCCGCGcucgagaAGcGCAcGCCGa -3'
miRNA:   3'- -CGGUCGCUg-----CCGGCGC-------UCaUGU-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 54553 0.75 0.209686
Target:  5'- gGCCAGCGACGucGCCGCGuucGCGAgCGa -3'
miRNA:   3'- -CGGUCGCUGC--CGGCGCucaUGUUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.